Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

27838 13 - 58402389 - 58402469 1 81

CTG ...

LQT ...

27840 13 - 54589857 - 54589904 1 48

CTG ...

LNR ...

27842 13 - 56083050 - 56083193 1 144

GTG ...

VKN ...

27844 13 + 41008251 - 41008289 1 39

TTG ...

LAL ...

27846 13 - 43419642 - 43419740 1 99

ATG ...

MVQ ...

27849 13 - 54467788 - 54467946 1 159

GTG ...

VDQ ...

27851 13 - 90883551 - 90883748 1 198

TTG ...

LLV ...

27853 1 - 135116515 - 135116616 1 102

ATG ...

MPL ...

27855 13 + 80890719 - 80890823 1 105

CTG ...

LLK ...

27857 1 - 118308717 - 118308779 1 63

CTG ...

LKT ...

27859 13 + 94997071 - 94997202 1 132

CTG ...

LEL ...

27861 13 - 106987248 - 106987349 1 102

GTG ...

VKE ...

27863 13 + 117220729 - 117220809 1 81

CTG ...

LSP ...

27865 13 + 14620760 - 14620810 1 51

GTG ...

VGG ...

27867 1 - 13579645 - 13579761 1 117

TTG ...

LAT ...

27870 13 + 59608773 - 59608862 1 90

TTG ...

LAA ...

27872 1 - 67020885 - 67020944 1 60

GTG ...

VWR ...

27874 13 - 48817835 - 48818378 2 108

ATG ...

MRT ...

27876 13 - 64364160 - 64365367 3 204

GTG ...

VVT ...

27878 13 - 85216104 - 85217026 3 234

ATG ...

MIP ...

27880 13 + 111714305 - 111714467 2 87

ATG ...

MIT ...

27882 13 - 112626331 - 112628912 3 168

TTG ...

LFL ...

27884 13 - 74323087 - 74323987 3 234

CTG ...

LVR ...

27886 13 - 49231297 - 49237487 2 99

GTG ...

VVV ...

27888 13 - 112626331 - 112628927 3 183

ATG ...

MQF ...

27890 13 - 54684056 - 54684447 2 141

CTG ...

LMR ...

27893 13 - 41194733 - 41197182 2 150

TTG ...

LIM ...

27895 13 - 64364160 - 64365313 2 150

ATG ...

MNP ...

27897 13 - 58259508 - 58264003 3 210

ATG ...

MRR ...

27899 13 - 53343173 - 53343807 2 81

GTG ...

VAA ...

27901 13 - 64364160 - 64365382 3 219

ATG ...

MGF ...

27903 13 - 58196623 - 58198940 2 72

TTG ...

LSS ...

27906 13 - 49238895 - 49240620 2 180

GTG ...

VEM ...

27908 13 - 49231297 - 49237499 2 111

ATG ...

MVA ...

27910 1 - 86351363 - 86351479 1 117

CTG ...

LFV ...

27912 13 - 37983462 - 37985322 2 84

TTG ...

LLV ...

27914 13 - 33955106 - 33996351 2 114

ATG ...

MQL ...

27917 13 + 85211871 - 85212767 2 72

ATG ...

MKM ...

27919 13 + 12580387 - 12581750 2 111

TTG ...

LEL ...

27921 13 - 56128280 - 56135425 3 282

GTG ...

VGG ...

27923 13 - 64364160 - 64365253 2 90

ATG ...

MKE ...

27925 13 + 41016395 - 41018359 5 144

TTG ...

LGA ...

27927 1 - 181001795 - 181001896 1 102

TTG ...

LKM ...

27929 13 - 56128280 - 56135407 3 264

GTG ...

VRS ...

27931 13 - 74323087 - 74323969 3 216

ATG ...

MFL ...

27933 13 + 24831852 - 24832824 3 300

CTG ...

LGF ...

27936 13 - 55362186 - 55362516 2 183

CTG ...

LAP ...

27938 13 + 119703621 - 119705077 3 198

TTG ...

LCL ...

27940 13 + 100651707 - 100654260 2 81

TTG ...

LSI ...

27942 13 + 41016388 - 41017707 4 72

GTG ...

VLV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5