Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

27519 1 + 90603562 - 90603675 1 114

GTG ...

VMA ...

27521 13 - 56128263 - 56128322 1 60

GTG ...

VGA ...

27523 13 + 17695442 - 17695483 1 42

GTG ...

VRR ...

27526 13 + 108368833 - 108368871 1 39

CTG ...

LSA ...

27528 13 - 64364103 - 64364138 1 36

GTG ...

VDL ...

27530 13 - 74050056 - 74050154 1 99

ATG ...

MAW ...

27533 13 - 41186891 - 41186923 1 33

TTG ...

LAV ...

27535 13 - 114288726 - 114288857 1 132

ATG ...

MMW ...

27537 13 + 44731837 - 44731875 1 39

TTG ...

LSP ...

27539 1 + 91526044 - 91526136 1 93

CTG ...

LQL ...

27541 13 - 90883551 - 90883745 1 195

CTG ...

LVL ...

27543 13 - 54599018 - 54599110 1 93

TTG ...

LTQ ...

27545 1 - 92451951 - 92452097 1 147

CTG ...

LNY ...

27548 13 - 38501586 - 38501690 1 105

TTG ...

LLL ...

27550 13 - 37987534 - 37987599 1 66

TTG ...

LSI ...

27552 13 - 112620583 - 112620687 1 105

GTG ...

VYY ...

27554 13 - 45001942 - 45002001 1 60

GTG ...

VAR ...

27557 13 + 119699720 - 119699800 1 81

ATG ...

MWE ...

27559 13 - 17804979 - 17805023 1 45

CTG ...

LPS ...

27562 13 - 54585754 - 54585924 1 171

CTG ...

LEA ...

27564 13 + 59608818 - 59608862 1 45

GTG ...

VLI ...

27566 1 - 10034824 - 10035084 1 261

TTG ...

LEV ...

27568 13 - 56128263 - 56128376 1 114

GTG ...

VGR ...

27570 1 + 191613030 - 191613287 1 258

CTG ...

LNP ...

27572 13 + 73604097 - 73604195 1 99

GTG ...

VWV ...

27574 13 + 21180608 - 21180643 1 36

GTG ...

VPG ...

27576 13 - 94210589 - 94210633 1 45

TTG ...

LSV ...

27578 13 + 112472607 - 112472660 1 54

ATG ...

MTS ...

27581 13 + 51123233 - 51123283 1 51

ATG ...

MNE ...

27584 13 - 54684334 - 54684429 1 96

TTG ...

LAV ...

27586 13 + 58163466 - 58163519 1 54

CTG ...

LFS ...

27589 13 + 100108162 - 100108233 1 72

GTG ...

VQS ...

27591 13 - 100476451 - 100476561 1 111

GTG ...

VSA ...

27593 13 - 64366942 - 64366992 1 51

TTG ...

LWT ...

27595 13 - 58127500 - 58127661 1 162

GTG ...

VAA ...

27597 13 - 38504720 - 38504797 1 78

CTG ...

LAL ...

27599 13 - 56104847 - 56104987 1 141

CTG ...

LEL ...

27601 13 + 69811643 - 69811690 1 48

ATG ...

MQT ...

27603 13 + 96391641 - 96391679 1 39

ATG ...

MTL ...

27605 13 + 20564502 - 20564591 1 90

CTG ...

LQN ...

27607 13 + 20564433 - 20564591 1 159

GTG ...

VVK ...

27610 13 + 56736009 - 56736077 1 69

GTG ...

VYE ...

27612 13 - 58263938 - 58264066 1 129

CTG ...

LGK ...

27614 13 + 59632984 - 59633043 1 60

GTG ...

VVM ...

27616 13 + 73331578 - 73331616 1 39

GTG ...

VSS ...

27619 1 + 172119904 - 172120083 1 180

CTG ...

LQP ...

27621 13 - 49237410 - 49237445 1 36

ATG ...

MTT ...

27623 13 - 112599881 - 112600123 1 243

GTG ...

VIG ...

27625 13 - 30540745 - 30540774 1 30

CTG ...

LPT ...

27627 13 - 56128280 - 56128498 1 219

GTG ...

VSC ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5