Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

27629 13 + 114820803 - 114820928 1 126

TTG ...

LAD ...

27631 13 + 41004822 - 41004860 1 39

CTG ...

LAA ...

27633 13 + 81792061 - 81792090 1 30

GTG ...

VLP ...

27635 13 - 58263938 - 58264042 1 105

ATG ...

MGS ...

27637 13 - 37989513 - 37989569 1 57

ATG ...

MYP ...

27639 13 - 66928206 - 66928259 1 54

TTG ...

LLR ...

27641 13 - 74051552 - 74051581 1 30

GTG ...

VWG ...

27643 13 - 55352942 - 55353046 1 105

CTG ...

LGN ...

27645 13 - 64364103 - 64364132 1 30

TTG ...

LPP ...

27647 13 - 114307811 - 114307843 1 33

ATG ...

MQL ...

27649 13 + 114819399 - 114819461 1 63

GTG ...

VPQ ...

27651 13 - 90883551 - 90883709 1 159

CTG ...

LRY ...

27653 13 + 108362313 - 108362363 1 51

CTG ...

LTE ...

27655 13 - 74207053 - 74207085 1 33

ATG ...

MTC ...

27658 13 - 58394581 - 58394625 1 45

GTG ...

VGV ...

27660 13 - 26769764 - 26769997 1 234

ATG ...

MSL ...

27662 13 - 114316933 - 114317010 1 78

GTG ...

VFQ ...

27664 1 + 153437553 - 153437651 1 99

CTG ...

LRR ...

27666 13 + 117220747 - 117220809 1 63

GTG ...

VGA ...

27668 13 + 55132323 - 55132394 1 72

GTG ...

VTL ...

27670 13 + 73604148 - 73604195 1 48

TTG ...

LVS ...

27672 13 - 37985260 - 37985322 1 63

TTG ...

LLV ...

27674 1 - 178331173 - 178331226 1 54

GTG ...

VPV ...

27676 13 - 33996235 - 33996351 1 117

ATG ...

MQL ...

27678 1 + 191607844 - 191608086 1 243

CTG ...

LAK ...

27680 13 - 62887870 - 62888004 1 135

CTG ...

LTR ...

27682 13 - 56128336 - 56128482 1 147

GTG ...

VSS ...

27684 13 + 59627894 - 59628055 1 162

CTG ...

LYA ...

27687 13 + 23696212 - 23696472 1 261

CTG ...

LGT ...

27689 13 + 59625482 - 59625601 1 120

CTG ...

LAC ...

27691 13 - 34986043 - 34986123 1 81

GTG ...

VGI ...

27693 13 - 24761809 - 24761889 1 81

CTG ...

LAS ...

27695 13 + 59628926 - 59629042 1 117

TTG ...

LSR ...

27697 1 - 86359276 - 86359371 1 96

TTG ...

LPQ ...

27699 1 - 166225624 - 166225686 1 63

TTG ...

LGS ...

27701 13 + 59608809 - 59608862 1 54

CTG ...

LLT ...

27703 13 + 20564511 - 20564591 1 81

CTG ...

LSY ...

27705 13 - 23621915 - 23622157 1 243

GTG ...

VRL ...

27707 13 - 114288726 - 114288812 1 87

ATG ...

MVQ ...

27710 13 - 55351409 - 55351465 1 57

GTG ...

VSW ...

27712 13 + 20589649 - 20589750 1 102

GTG ...

VAD ...

27714 13 - 58263938 - 58264111 1 174

TTG ...

LPC ...

27716 13 + 14620739 - 14620810 1 72

TTG ...

LVF ...

27718 13 - 106910188 - 106910382 1 195

CTG ...

LIA ...

27720 13 - 56128336 - 56128500 1 165

ATG ...

MCP ...

27722 1 + 191825540 - 191825569 1 30

CTG ...

LLY ...

27724 13 + 21180584 - 21180643 1 60

CTG ...

LRP ...

27726 13 - 74339043 - 74339150 1 108

TTG ...

LVD ...

27728 1 + 38032285 - 38032392 1 108

GTG ...

VPS ...

27730 1 - 93635601 - 93635633 1 33

CTG ...

LGV ...

Previous 241 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5