Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

27413 13 + 44919839 - 44919952 1 114

GTG ...

VSG ...

27415 13 - 111487409 - 111487558 1 150

ATG ...

MSN ...

27418 13 + 49722740 - 49722778 1 39

GTG ...

VIR ...

27421 13 - 106976793 - 106976855 1 63

CTG ...

LAK ...

27423 13 + 14620742 - 14620810 1 69

GTG ...

VFL ...

27425 13 - 30541204 - 30541236 1 33

GTG ...

VRL ...

27427 13 + 24802525 - 24802695 1 171

ATG ...

MGK ...

27429 13 - 47101923 - 47102024 1 102

CTG ...

LTM ...

27431 13 - 54468529 - 54468705 1 177

GTG ...

VLG ...

27433 13 - 74344885 - 74344938 1 54

GTG ...

VAR ...

27436 13 - 100476451 - 100476546 1 96

TTG ...

LAR ...

27438 13 + 114820824 - 114820928 1 105

GTG ...

VIF ...

27440 13 - 37985985 - 37986032 1 48

CTG ...

LSS ...

27442 13 + 44910403 - 44910465 1 63

GTG ...

VDT ...

27444 1 + 90603556 - 90603675 1 120

GTG ...

VAV ...

27446 13 - 85223454 - 85223540 1 87

CTG ...

LRY ...

27450 1 + 160906611 - 160906673 1 63

GTG ...

VAA ...

27452 13 - 30541204 - 30541266 1 63

TTG ...

LIA ...

27454 13 - 73327430 - 73327462 1 33

ATG ...

MKK ...

27456 13 + 55132347 - 55132394 1 48

GTG ...

VQT ...

27458 13 + 55638115 - 55638213 1 99

ATG ...

MTD ...

27460 13 - 106976793 - 106976837 1 45

ATG ...

MHI ...

27462 13 - 103774295 - 103774393 1 99

GTG ...

VTN ...

27464 13 - 58264075 - 58264164 1 90

CTG ...

LSH ...

27466 13 - 56128280 - 56128378 1 99

CTG ...

LWD ...

27468 1 - 172075401 - 172075475 1 75

CTG ...

LKW ...

27470 13 - 112644497 - 112644544 1 48

ATG ...

MET ...

27472 13 - 26769764 - 26769952 1 189

ATG ...

MRP ...

27474 13 + 55593522 - 55593578 1 57

ATG ...

MTN ...

27476 13 + 114818283 - 114818327 1 45

CTG ...

LAS ...

27478 13 + 55595478 - 55595540 1 63

TTG ...

LTS ...

27480 1 - 39565046 - 39565111 1 66

CTG ...

LYT ...

27483 13 - 54468529 - 54468786 1 258

CTG ...

LGP ...

27485 1 - 178330158 - 178330271 1 114

TTG ...

LAI ...

27487 13 + 12565971 - 12566267 1 297

CTG ...

LEA ...

27489 13 - 90883551 - 90883778 1 228

CTG ...

LIG ...

27491 13 + 59627906 - 59628055 1 150

CTG ...

LMS ...

27493 13 + 23531125 - 23531247 1 123

GTG ...

VAR ...

27495 1 + 191607865 - 191608086 1 222

CTG ...

LSR ...

27497 1 + 191822586 - 191822819 1 234

GTG ...

VLH ...

27499 1 + 191596962 - 191597024 1 63

CTG ...

LLA ...

27501 13 - 66929868 - 66930014 1 147

TTG ...

LFW ...

27503 13 - 94232081 - 94232122 1 42

CTG ...

LQS ...

27505 13 - 26769458 - 26769679 1 222

CTG ...

LRP ...

27507 13 + 23934484 - 23934630 1 147

GTG ...

VAR ...

27509 13 - 74327271 - 74327342 1 72

CTG ...

LQC ...

27511 1 - 178330158 - 178330292 1 135

GTG ...

VAV ...

27513 13 - 54589901 - 54589990 1 90

CTG ...

LLL ...

27515 1 - 118305230 - 118305310 1 81

ATG ...

MSI ...

27517 13 + 81786922 - 81786969 1 48

CTG ...

LAR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5