Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

27308 13 - 114288726 - 114288809 1 84

GTG ...

VQT ...

27310 1 - 92639666 - 92639719 1 54

ATG ...

MRR ...

27313 13 - 41186845 - 41186919 1 75

CTG ...

LSH ...

27315 13 - 26769823 - 26769852 1 30

GTG ...

VGD ...

27317 13 - 56128336 - 56128521 1 186

CTG ...

LSP ...

27319 13 + 20589670 - 20589750 1 81

GTG ...

VTG ...

27321 13 + 111714305 - 111714385 1 81

ATG ...

MIT ...

27323 13 - 90883551 - 90883769 1 219

CTG ...

LAM ...

27325 13 + 23531084 - 23531140 1 57

CTG ...

LLR ...

27327 13 + 66976754 - 66976789 1 36

ATG ...

MPT ...

27329 13 + 21180467 - 21180643 1 177

ATG ...

MPC ...

27331 13 - 62868978 - 62869028 1 51

TTG ...

LTL ...

27334 1 + 191614598 - 191614651 1 54

CTG ...

LIA ...

27336 13 + 20572412 - 20572468 1 57

GTG ...

VEG ...

27338 13 - 106910188 - 106910385 1 198

GTG ...

VLI ...

27340 13 - 26769458 - 26769667 1 210

GTG ...

VNR ...

27343 13 + 54796187 - 54796222 1 36

GTG ...

VSD ...

27345 13 - 96666027 - 96666221 1 195

GTG ...

VLS ...

27347 13 + 54590742 - 54590804 1 63

CTG ...

LPS ...

27349 13 - 54589901 - 54589984 1 84

TTG ...

LGQ ...

27351 13 - 30541204 - 30541278 1 75

GTG ...

VLK ...

27353 13 + 119456992 - 119457081 1 90

TTG ...

LDD ...

27355 13 - 58215446 - 58215496 1 51

CTG ...

LSR ...

27357 13 + 56723451 - 56723519 1 69

ATG ...

MAP ...

27359 1 - 75501951 - 75502220 1 270

GTG ...

VQV ...

27361 13 + 55594766 - 55594834 1 69

GTG ...

VST ...

27363 13 + 14063789 - 14063818 1 30

ATG ...

MFA ...

27365 1 - 153487529 - 153487564 1 36

CTG ...

LCS ...

27367 13 - 66928153 - 66928302 1 150

TTG ...

LSP ...

27369 13 + 96391647 - 96391679 1 33

CTG ...

LTV ...

27371 13 - 111487838 - 111487900 1 63

ATG ...

MKT ...

27373 1 + 75146975 - 75147055 1 81

CTG ...

LPP ...

27375 13 + 14620727 - 14620810 1 84

GTG ...

VFV ...

27377 13 + 69626510 - 69626563 1 54

TTG ...

LPG ...

27379 13 + 69615458 - 69615550 1 93

TTG ...

LRK ...

27382 13 - 48817835 - 48817864 1 30

ATG ...

MPP ...

27385 1 + 63177818 - 63177880 1 63

CTG ...

LCH ...

27387 1 + 172148147 - 172148302 1 156

GTG ...

VVA ...

27389 13 + 108047440 - 108047469 1 30

CTG ...

LLP ...

27391 13 - 58394581 - 58394655 1 75

GTG ...

VVL ...

27393 13 - 38504720 - 38504800 1 81

GTG ...

VLA ...

27395 13 - 64369089 - 64369160 1 72

TTG ...

LNH ...

27397 13 - 37985260 - 37985298 1 39

TTG ...

LLA ...

27399 13 - 26769764 - 26769991 1 228

CTG ...

LKP ...

27401 13 - 54599107 - 54599142 1 36

ATG ...

MAT ...

27403 13 - 56089717 - 56089857 1 141

CTG ...

LNL ...

27405 13 + 23696248 - 23696472 1 225

CTG ...

LPR ...

27407 13 - 54589656 - 54589757 1 102

ATG ...

MPG ...

27409 13 - 64365191 - 64365280 1 90

ATG ...

MGF ...

27411 13 + 43401780 - 43401821 1 42

ATG ...

MPR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5