Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

26974 1 + 153447757 - 153447804 1 48

CTG ...

LNL ...

26976 13 - 55093115 - 55093150 1 36

GTG ...

VIS ...

26979 13 - 66928153 - 66928320 1 168

GTG ...

VDD ...

26981 13 - 54589901 - 54589987 1 87

CTG ...

LLG ...

26983 13 - 106865861 - 106865956 1 96

CTG ...

LYP ...

26985 13 + 24801664 - 24801699 1 36

ATG ...

MEG ...

26987 13 - 37987534 - 37987581 1 48

CTG ...

LQS ...

26989 1 - 135388507 - 135388665 1 159

GTG ...

VFA ...

26992 13 + 69626519 - 69626563 1 45

CTG ...

LKW ...

26994 13 - 100488843 - 100488920 1 78

GTG ...

VVV ...

26997 13 + 23934466 - 23934630 1 165

CTG ...

LVL ...

26999 13 - 46727497 - 46727568 1 72

GTG ...

VCR ...

27001 13 - 90883551 - 90883751 1 201

CTG ...

LLL ...

27003 13 + 41004794 - 41004943 1 150

CTG ...

LAS ...

27005 13 - 100488843 - 100488917 1 75

GTG ...

VVD ...

27007 13 - 34987533 - 34987565 1 33

CTG ...

LVT ...

27009 13 + 56735829 - 56736077 1 249

GTG ...

VYA ...

27012 1 + 191586591 - 191586665 1 75

CTG ...

LDS ...

27014 13 + 55594763 - 55594834 1 72

CTG ...

LVS ...

27016 13 + 55638091 - 55638213 1 123

CTG ...

LTK ...

27018 13 - 54766385 - 54766435 1 51

CTG ...

LTT ...

27021 1 + 185345333 - 185345500 1 168

GTG ...

VDQ ...

27023 13 - 23621915 - 23622076 1 162

CTG ...

LRG ...

27026 13 - 37989513 - 37989560 1 48

GTG ...

VNQ ...

27028 13 + 41001307 - 41001417 1 111

TTG ...

LPG ...

27030 13 + 13343294 - 13343335 1 42

CTG ...

LCA ...

27033 13 + 55594730 - 55594834 1 105

CTG ...

LRA ...

27035 13 + 23739276 - 23739347 1 72

GTG ...

VLP ...

27037 13 - 54589656 - 54589778 1 123

ATG ...

MLV ...

27040 13 + 59625539 - 59625601 1 63

CTG ...

LLS ...

27042 13 - 37985260 - 37985319 1 60

CTG ...

LVL ...

27044 13 - 62875125 - 62875196 1 72

GTG ...

VSE ...

27046 13 + 49609191 - 49609232 1 42

CTG ...

LCT ...

27048 13 + 94837166 - 94837195 1 30

CTG ...

LHI ...

27050 13 + 56723490 - 56723519 1 30

TTG ...

LDF ...

27053 13 - 58127500 - 58127760 1 261

GTG ...

VRG ...

27055 13 - 100489127 - 100489171 1 45

GTG ...

VFE ...

27059 1 + 86605187 - 86605216 1 30

GTG ...

VKG ...

27061 13 - 106979473 - 106979511 1 39

TTG ...

LLM ...

27064 13 - 30541204 - 30541275 1 72

CTG ...

LKF ...

27067 13 - 54599107 - 54599148 1 42

CTG ...

LPM ...

27069 13 + 104178861 - 104178899 1 39

GTG ...

VAR ...

27072 13 - 38501586 - 38501663 1 78

GTG ...

VGE ...

27074 13 - 41189967 - 41190053 1 87

TTG ...

LFY ...

27076 13 - 100488843 - 100488914 1 72

GTG ...

VDG ...

27078 13 - 76018250 - 76018384 1 135

ATG ...

MKA ...

27081 13 - 99336719 - 99336775 1 57

ATG ...

MQK ...

27084 13 - 23621915 - 23622013 1 99

CTG ...

LQL ...

27086 13 - 106865861 - 106865914 1 54

GTG ...

VSQ ...

27088 13 - 47101923 - 47102060 1 138

GTG ...

VEG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5