Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

26861 13 + 59608806 - 59608862 1 57

GTG ...

VLL ...

26864 13 - 24761809 - 24761880 1 72

TTG ...

LNP ...

26866 1 - 156432839 - 156432922 1 84

GTG ...

VHE ...

26868 1 - 10030533 - 10030673 1 141

TTG ...

LDR ...

26871 1 + 79778120 - 79778341 1 222

TTG ...

LPA ...

26873 1 + 86605124 - 86605216 1 93

CTG ...

LAE ...

26875 13 - 66929868 - 66930155 1 288

TTG ...

LTS ...

26877 13 - 28953395 - 28953607 1 213

CTG ...

LQW ...

26880 13 - 34987533 - 34987562 1 30

GTG ...

VTT ...

26884 13 - 100468907 - 100469011 1 105

GTG ...

VCQ ...

26886 13 + 23531087 - 23531140 1 54

TTG ...

LRF ...

26888 13 - 38501586 - 38501687 1 102

CTG ...

LLF ...

26891 13 + 53394204 - 53394308 1 105

GTG ...

VCS ...

26894 13 + 41249964 - 41250029 1 66

ATG ...

MAA ...

26896 13 - 54598718 - 54598780 1 63

CTG ...

LEE ...

26898 13 - 74339043 - 74339156 1 114

GTG ...

VHL ...

26900 13 + 66933195 - 66933248 1 54

TTG ...

LQA ...

26902 13 + 23739273 - 23739347 1 75

CTG ...

LVL ...

26904 13 + 114819342 - 114819461 1 120

GTG ...

VLY ...

26906 1 + 75143085 - 75143132 1 48

CTG ...

LHS ...

26908 13 - 64365191 - 64365253 1 63

ATG ...

MKE ...

26910 13 - 49231210 - 49231290 1 81

GTG ...

VWT ...

26912 13 - 55351409 - 55351444 1 36

CTG ...

LTS ...

26914 1 + 90610977 - 90611099 1 123

GTG ...

VLE ...

26917 13 - 49237410 - 49237499 1 90

ATG ...

MVA ...

26919 13 + 24801701 - 24801790 1 90

ATG ...

MAP ...

26922 13 - 54589901 - 54590029 1 129

GTG ...

VVL ...

26924 13 - 54468529 - 54468729 1 201

GTG ...

VSS ...

26926 13 - 100730824 - 100730865 1 42

GTG ...

VPG ...

26928 13 - 64366942 - 64367004 1 63

GTG ...

VNR ...

26930 13 - 58127803 - 58127925 1 123

TTG ...

LPT ...

26932 13 + 21180599 - 21180643 1 45

CTG ...

LLR ...

26934 13 - 66922752 - 66922808 1 57

CTG ...

LTK ...

26936 13 - 26769764 - 26770024 1 261

ATG ...

MPT ...

26938 13 + 85206167 - 85206202 1 36

TTG ...

LPV ...

26940 13 + 41004747 - 41004818 1 72

CTG ...

LWL ...

26942 1 + 133365533 - 133365697 1 165

ATG ...

MPH ...

26944 13 - 94210542 - 94210622 1 81

CTG ...

LSM ...

26946 13 + 100109110 - 100109139 1 30

CTG ...

LPL ...

26948 1 - 181184247 - 181184360 1 114

GTG ...

VRV ...

26950 13 - 37985260 - 37985313 1 54

TTG ...

LGF ...

26952 1 - 4783947 - 4784021 1 75

CTG ...

LGF ...

26955 13 + 59625557 - 59625601 1 45

CTG ...

LEL ...

26957 13 + 59601023 - 59601052 1 30

CTG ...

LRH ...

26960 1 + 134411044 - 134411079 1 36

CTG ...

LGY ...

26962 1 + 84896615 - 84896716 1 102

CTG ...

LED ...

26964 13 - 30541204 - 30541311 1 108

ATG ...

MSR ...

26966 13 + 108158754 - 108158852 1 99

ATG ...

MAA ...

26969 13 - 94285216 - 94285266 1 51

TTG ...

LTA ...

26971 13 + 117220741 - 117220809 1 69

CTG ...

LAV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5