Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

26743 13 - 56089717 - 56089812 1 96

GTG ...

VEA ...

26746 13 + 114819426 - 114819461 1 36

CTG ...

LWK ...

26748 13 - 41194744 - 41194818 1 75

GTG ...

VVP ...

26751 13 - 74327271 - 74327345 1 75

ATG ...

MLQ ...

26753 13 + 97161121 - 97161171 1 51

GTG ...

VTT ...

26756 13 + 69809944 - 69810042 1 99

TTG ...

LTI ...

26759 13 + 41004777 - 41004818 1 42

CTG ...

LPP ...

26761 13 - 41191895 - 41191927 1 33

GTG ...

VSE ...

26763 13 + 24802504 - 24802695 1 192

CTG ...

LRV ...

26765 13 - 103774295 - 103774402 1 108

GTG ...

VIQ ...

26767 13 - 49237410 - 49237505 1 96

GTG ...

VAM ...

26769 13 + 112504197 - 112504445 1 249

TTG ...

LSG ...

26771 13 - 62887870 - 62887953 1 84

TTG ...

LTQ ...

26773 13 + 108388637 - 108388702 1 66

CTG ...

LFM ...

26776 13 - 56096120 - 56096161 1 42

CTG ...

LSS ...

26778 13 - 62875125 - 62875226 1 102

CTG ...

LKS ...

26780 13 - 37983389 - 37983424 1 36

CTG ...

LDS ...

26782 13 - 96666500 - 96666613 1 114

GTG ...

VTL ...

26784 1 + 152771512 - 152771544 1 33

GTG ...

VLC ...

26786 13 - 56128280 - 56128468 1 189

CTG ...

LFL ...

26788 13 - 41070372 - 41070443 1 72

GTG ...

VSL ...

26791 13 - 64365191 - 64365259 1 69

ATG ...

MAM ...

26793 13 + 23934541 - 23934630 1 90

CTG ...

LWV ...

26796 13 - 33996235 - 33996306 1 72

GTG ...

VAF ...

26798 13 - 58394581 - 58394634 1 54

CTG ...

LVG ...

26801 13 + 59625452 - 59625601 1 150

TTG ...

LLK ...

26803 13 - 41187425 - 41187490 1 66

CTG ...

LCS ...

26805 13 + 18723201 - 18723230 1 30

TTG ...

LKN ...

26808 13 + 48261466 - 48261501 1 36

TTG ...

LSR ...

26811 13 - 114351458 - 114351508 1 51

TTG ...

LEA ...

26813 13 - 100468907 - 100468990 1 84

GTG ...

VDC ...

26815 13 + 59625455 - 59625601 1 147

TTG ...

LKQ ...

26817 13 - 56128336 - 56128506 1 171

CTG ...

LTM ...

26819 13 + 44910361 - 44910465 1 105

GTG ...

VEE ...

26821 13 - 90883551 - 90883739 1 189

CTG ...

LAY ...

26823 13 - 54598718 - 54598819 1 102

GTG ...

VTE ...

26826 1 - 86350776 - 86350916 1 141

GTG ...

VAL ...

26828 13 + 23739279 - 23739347 1 69

CTG ...

LPH ...

26831 1 - 86545698 - 86545751 1 54

TTG ...

LIE ...

26834 13 + 55638109 - 55638213 1 105

GTG ...

VGM ...

26836 13 + 48261433 - 48261501 1 69

TTG ...

LRA ...

26838 13 + 41021125 - 41021154 1 30

CTG ...

LGP ...

26841 1 + 82587381 - 82587443 1 63

CTG ...

LLL ...

26843 13 - 62875125 - 62875286 1 162

GTG ...

VTG ...

26845 1 - 178331837 - 178331926 1 90

CTG ...

LEK ...

26847 13 + 66933204 - 66933248 1 45

CTG ...

LEL ...

26850 13 + 80889094 - 80889141 1 48

TTG ...

LLP ...

26853 13 + 69626498 - 69626563 1 66

GTG ...

VSA ...

26856 13 - 37987633 - 37987698 1 66

ATG ...

MPR ...

26858 13 - 8847604 - 8847672 1 69

TTG ...

LWS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5