Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

26630 13 - 106982520 - 106982663 1 144

GTG ...

VIT ...

26632 13 - 62867314 - 62867439 1 126

GTG ...

VPG ...

26634 13 + 55638061 - 55638213 1 153

CTG ...

LEV ...

26636 13 - 66929868 - 66929939 1 72

GTG ...

VAE ...

26638 13 - 30877571 - 30877609 1 39

CTG ...

LRS ...

26641 13 - 74339043 - 74339174 1 132

ATG ...

MGR ...

26643 13 - 111487409 - 111487576 1 168

CTG ...

LTS ...

26646 13 + 20572400 - 20572468 1 69

CTG ...

LNR ...

26648 13 - 58128371 - 58128550 1 180

GTG ...

VWC ...

26650 13 + 21180602 - 21180643 1 42

TTG ...

LRV ...

26652 13 - 37985260 - 37985295 1 36

TTG ...

LAF ...

26654 13 - 37985985 - 37986035 1 51

ATG ...

MLS ...

26656 13 - 114316933 - 114317013 1 81

CTG ...

LVF ...

26658 13 - 49237410 - 49237559 1 150

CTG ...

LPT ...

26661 13 + 111714314 - 111714385 1 72

TTG ...

LLN ...

26663 1 - 55248806 - 55248910 1 105

TTG ...

LKP ...

26665 13 - 23934023 - 23934058 1 36

ATG ...

MPQ ...

26668 13 - 100476451 - 100476516 1 66

TTG ...

LDA ...

26670 1 - 181211072 - 181211170 1 99

CTG ...

LGS ...

26672 13 - 90883551 - 90883757 1 207

CTG ...

LIL ...

26675 13 - 74339043 - 74339180 1 138

CTG ...

LKM ...

26677 13 + 20564436 - 20564591 1 156

GTG ...

VKE ...

26679 13 - 64366953 - 64366985 1 33

CTG ...

LFS ...

26681 13 - 74339043 - 74339147 1 105

GTG ...

VDR ...

26683 13 - 56104847 - 56104981 1 135

CTG ...

LAG ...

26686 13 - 49237410 - 49237496 1 87

GTG ...

VAP ...

26688 1 + 75210989 - 75211039 1 51

ATG ...

MPD ...

26690 1 - 155794521 - 155794625 1 105

CTG ...

LRM ...

26692 13 - 58179236 - 58179385 1 150

CTG ...

LAW ...

26694 13 - 37992020 - 37992049 1 30

TTG ...

LKM ...

26696 13 + 23696242 - 23696472 1 231

CTG ...

LLL ...

26699 13 - 54467788 - 54467865 1 78

GTG ...

VRT ...

26702 1 - 88204950 - 88205030 1 81

GTG ...

VEV ...

26704 13 + 54590754 - 54590804 1 51

ATG ...

MAF ...

26707 13 + 55122332 - 55122565 1 234

TTG ...

LQQ ...

26709 13 + 41249892 - 41250029 1 138

GTG ...

VSC ...

26711 13 - 66929868 - 66930092 1 225

TTG ...

LPG ...

26713 13 + 59630030 - 59630224 1 195

GTG ...

VRK ...

26715 13 + 49609176 - 49609232 1 57

CTG ...

LLK ...

26717 13 - 58128371 - 58128523 1 153

GTG ...

VAA ...

26719 13 + 108046438 - 108046482 1 45

ATG ...

MYI ...

26721 13 - 66922752 - 66922820 1 69

CTG ...

LGP ...

26723 13 + 41004791 - 41004943 1 153

GTG ...

VLA ...

26725 13 + 41008257 - 41008289 1 33

CTG ...

LSV ...

26728 13 - 37994001 - 37994186 1 186

GTG ...

VPR ...

26730 13 - 64312263 - 64312307 1 45

ATG ...

MSK ...

26733 13 + 41004753 - 41004818 1 66

CTG ...

LIS ...

26736 13 - 47041395 - 47041439 1 45

GTG ...

VTR ...

26738 13 - 54466176 - 54466337 1 162

GTG ...

VGN ...

26740 13 - 55351409 - 55351477 1 69

ATG ...

MDD ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5