Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

26503 13 - 62887870 - 62887941 1 72

CTG ...

LNS ...

26505 1 + 134410978 - 134411079 1 102

GTG ...

VLL ...

26507 13 + 59632960 - 59633043 1 84

CTG ...

LKV ...

26510 13 - 58263938 - 58264003 1 66

ATG ...

MRR ...

26512 13 - 100730802 - 100730855 1 54

CTG ...

LVS ...

26515 13 + 12565995 - 12566267 1 273

CTG ...

LPP ...

26518 13 - 49237410 - 49237487 1 78

GTG ...

VVV ...

26520 13 + 55635033 - 55635071 1 39

CTG ...

LMA ...

26522 13 - 64366554 - 64366601 1 48

ATG ...

MTQ ...

26524 13 - 24761809 - 24761853 1 45

GTG ...

VRL ...

26527 13 - 106982520 - 106982636 1 117

GTG ...

VMV ...

26530 13 - 48818298 - 48818378 1 81

ATG ...

MRT ...

26533 13 - 54589901 - 54590011 1 111

CTG ...

LLF ...

26536 13 + 54796172 - 54796222 1 51

TTG ...

LAQ ...

26539 13 - 64366554 - 64366610 1 57

CTG ...

LWL ...

26541 1 - 92470758 - 92470967 1 210

GTG ...

VHC ...

26543 13 + 23746814 - 23746933 1 120

CTG ...

LHQ ...

26546 1 + 171356767 - 171356832 1 66

GTG ...

VCW ...

26548 13 + 21180518 - 21180643 1 126

GTG ...

VPA ...

26550 13 + 23531066 - 23531140 1 75

GTG ...

VPV ...

26553 13 + 49609170 - 49609232 1 63

TTG ...

LCL ...

26556 1 + 167352525 - 167352743 1 219

GTG ...

VIA ...

26559 13 + 80890659 - 80890823 1 165

GTG ...

VAN ...

26562 13 - 96666027 - 96666218 1 192

CTG ...

LSS ...

26565 13 + 100108177 - 100108233 1 57

TTG ...

LLL ...

26568 13 - 26769263 - 26769442 1 180

ATG ...

MKS ...

26570 13 + 59625563 - 59625601 1 39

CTG ...

LYS ...

26572 13 + 41004749 - 41004943 1 195

GTG ...

VAD ...

26574 13 + 41008096 - 41008140 1 45

GTG ...

VKR ...

26576 13 - 47041395 - 47041463 1 69

CTG ...

LED ...

26579 1 + 134560514 - 134560546 1 33

CTG ...

LGS ...

26581 13 - 66922752 - 66922841 1 90

TTG ...

LGL ...

26584 13 + 51171189 - 51171224 1 36

CTG ...

LFQ ...

26587 13 + 23751137 - 23751217 1 81

CTG ...

LDA ...

26590 13 - 74339043 - 74339201 1 159

ATG ...

MVC ...

26592 13 + 112504227 - 112504445 1 219

CTG ...

LKQ ...

26595 1 - 156431059 - 156431106 1 48

CTG ...

LDY ...

26597 13 - 58215352 - 58215462 1 111

GTG ...

VSR ...

26600 13 - 114307811 - 114307855 1 45

GTG ...

VPK ...

26602 13 - 37985985 - 37986047 1 63

ATG ...

MYS ...

26604 13 + 100655286 - 100655330 1 45

CTG ...

LTS ...

26607 13 + 20564481 - 20564591 1 111

CTG ...

LDQ ...

26609 13 - 26769764 - 26769826 1 63

TTG ...

LRP ...

26611 13 + 24802510 - 24802695 1 186

GTG ...

VKT ...

26613 13 + 100109023 - 100109061 1 39

GTG ...

VEI ...

26616 13 - 58402389 - 58402439 1 51

CTG ...

LHG ...

26619 1 + 131153246 - 131153317 1 72

TTG ...

LAP ...

26622 1 + 86173616 - 86173738 1 123

CTG ...

LKR ...

26625 13 - 46727497 - 46727574 1 78

GTG ...

VSV ...

26628 1 + 38995770 - 38995799 1 30

GTG ...

VDS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5