Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

26370 13 + 24802143 - 24802178 1 36

GTG ...

VSP ...

26372 13 - 58263938 - 58264078 1 141

CTG ...

LIP ...

26375 13 + 24802522 - 24802695 1 174

GTG ...

VMG ...

26377 13 + 44731828 - 44731875 1 48

ATG ...

MKQ ...

26380 13 - 37987699 - 37987746 1 48

TTG ...

LAL ...

26383 13 - 33996235 - 33996297 1 63

CTG ...

LDW ...

26387 13 - 114316873 - 114316905 1 33

TTG ...

LIP ...

26390 13 - 100476451 - 100476564 1 114

TTG ...

LVS ...

26393 13 + 111714332 - 111714385 1 54

TTG ...

LER ...

26396 13 - 64142284 - 64142325 1 42

ATG ...

MQT ...

26399 1 - 86350776 - 86350898 1 123

GTG ...

VEA ...

26401 13 + 85189478 - 85189525 1 48

CTG ...

LSL ...

26404 1 + 171437592 - 171437705 1 114

CTG ...

LFP ...

26406 13 + 59627918 - 59628055 1 138

CTG ...

LSR ...

26409 13 + 114820875 - 114820928 1 54

CTG ...

LLQ ...

26411 13 - 62867314 - 62867442 1 129

ATG ...

MVP ...

26414 13 + 44919917 - 44919952 1 36

GTG ...

VDV ...

26417 13 - 73327430 - 73327465 1 36

ATG ...

MMK ...

26420 1 + 135739427 - 135739462 1 36

ATG ...

MWG ...

26422 13 - 94285216 - 94285251 1 36

TTG ...

LRI ...

26425 13 + 41249910 - 41250029 1 120

CTG ...

LAF ...

26428 13 + 21180539 - 21180643 1 105

CTG ...

LPR ...

26430 13 - 30541204 - 30541332 1 129

CTG ...

LSV ...

26432 13 - 49237410 - 49237481 1 72

GTG ...

VAA ...

26435 1 - 181203020 - 181203100 1 81

CTG ...

LEA ...

26437 13 - 26769458 - 26769643 1 186

CTG ...

LPM ...

26440 13 - 112628820 - 112628882 1 63

GTG ...

VKI ...

26443 13 - 62875125 - 62875262 1 138

CTG ...

LDI ...

26446 13 - 49237410 - 49237484 1 75

GTG ...

VVA ...

26448 13 + 20589667 - 20589750 1 84

GTG ...

VVT ...

26451 1 + 134411035 - 134411079 1 45

TTG ...

LDK ...

26453 13 + 55635036 - 55635071 1 36

ATG ...

MAV ...

26456 13 - 106842085 - 106842189 1 105

GTG ...

VIE ...

26459 13 - 26769458 - 26769688 1 231

CTG ...

LRC ...

26461 13 - 66929868 - 66929951 1 84

CTG ...

LLP ...

26464 13 + 55132320 - 55132394 1 75

TTG ...

LVT ...

26467 13 + 14064848 - 14064877 1 30

GTG ...

VGI ...

26470 13 - 85244184 - 85244315 1 132

GTG ...

VRP ...

26473 1 - 118300932 - 118301018 1 87

GTG ...

VSL ...

26475 13 - 62875125 - 62875241 1 117

CTG ...

LVI ...

26477 13 - 85288930 - 85289028 1 99

TTG ...

LFP ...

26480 13 - 103774295 - 103774372 1 78

GTG ...

VTS ...

26483 13 + 24802549 - 24802695 1 147

CTG ...

LFF ...

26485 13 + 108046432 - 108046482 1 51

ATG ...

MYM ...

26488 1 + 58403675 - 58403761 1 87

CTG ...

LKI ...

26491 13 - 64367925 - 64367978 1 54

ATG ...

MAT ...

26493 13 - 38036796 - 38036831 1 36

ATG ...

MDH ...

26496 13 - 112644497 - 112644553 1 57

CTG ...

LEQ ...

26498 13 - 106865861 - 106865926 1 66

CTG ...

LST ...

26501 13 + 119703621 - 119703713 1 93

TTG ...

LCL ...

Previous 230 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5