Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

26235 12 - 85819494 - 85824482 4 249

CTG ...

LDR ...

26238 12 + 83688242 - 83699617 4 225

CTG ...

LRR ...

26241 12 - 78843606 - 78848439 4 195

ATG ...

MPK ...

26243 12 + 83648228 - 83651684 3 225

GTG ...

VQG ...

26245 12 - 31933013 - 31933526 3 189

ATG ...

MFI ...

26248 12 + 105032885 - 105040281 2 105

GTG ...

VRL ...

26250 12 - 85272823 - 85280129 3 144

GTG ...

VQP ...

26252 1 + 191829457 - 191829555 1 99

CTG ...

LMK ...

26254 12 + 78862124 - 78866546 3 78

TTG ...

LPL ...

26256 12 - 81573830 - 81581932 5 291

TTG ...

LGF ...

26258 12 + 78862106 - 78866546 3 96

GTG ...

VFR ...

26260 12 + 83648207 - 83651684 3 246

TTG ...

LVL ...

26262 12 + 17266624 - 17274044 3 270

GTG ...

VIG ...

26264 12 + 4826790 - 4827056 2 150

ATG ...

MWS ...

26266 12 + 84136529 - 84138394 2 150

CTG ...

LED ...

26268 12 - 14150651 - 14151975 3 264

CTG ...

LGT ...

26270 12 + 70943513 - 70947485 2 39

TTG ...

LRF ...

26272 12 + 111713378 - 111722657 2 87

GTG ...

VSA ...

26274 1 + 93784797 - 93784961 1 165

GTG ...

VEL ...

26277 12 + 8936749 - 8938147 2 78

ATG ...

MCQ ...

26279 1 + 38040706 - 38040744 1 39

CTG ...

LII ...

26281 12 + 77323926 - 77331964 2 81

ATG ...

MGR ...

26283 1 - 172069972 - 172070148 1 177

GTG ...

VED ...

26285 12 + 8936713 - 8938147 2 114

GTG ...

VFG ...

26287 1 - 178332143 - 178332325 1 183

ATG ...

MRR ...

26289 1 + 105664426 - 105664641 1 216

TTG ...

LLT ...

26291 12 + 113153352 - 113153658 3 123

CTG ...

LTS ...

26293 12 + 70460507 - 70464406 2 81

TTG ...

LEY ...

26295 12 + 102899430 - 102900308 2 126

CTG ...

LAT ...

26297 1 - 161241721 - 161241837 1 117

GTG ...

VMV ...

26299 12 - 86702281 - 86703289 2 294

CTG ...

LTS ...

26302 12 + 17270528 - 17273967 2 33

ATG ...

MHH ...

26304 12 - 40036823 - 40037299 2 48

ATG ...

MSL ...

26307 1 - 86357338 - 86357463 1 126

TTG ...

LLS ...

26309 12 + 112647975 - 112649071 3 99

TTG ...

LQT ...

26311 12 + 98785670 - 98786577 2 75

CTG ...

LHI ...

26313 12 + 32967537 - 32969216 2 243

TTG ...

LNQ ...

26315 12 - 78857328 - 78861518 3 117

CTG ...

LEV ...

26317 12 + 4817716 - 4820615 3 126

GTG ...

VSP ...

26319 1 - 119421817 - 119421858 1 42

ATG ...

MRR ...

26321 12 + 4820679 - 4826759 2 36

TTG ...

LGN ...

26326 1 - 172075401 - 172075493 1 93

GTG ...

VEK ...

26343 1 + 134967782 - 134967811 1 30

TTG ...

LRS ...

26348 13 + 24802534 - 24802695 1 162

TTG ...

LVM ...

26351 13 + 21180548 - 21180643 1 96

GTG ...

VPS ...

26356 13 + 55113747 - 55113791 1 45

GTG ...

VKR ...

26359 13 - 54684334 - 54684396 1 63

GTG ...

VGH ...

26362 13 + 119703585 - 119703713 1 129

CTG ...

LSY ...

26364 13 + 114819345 - 114819461 1 117

TTG ...

LYF ...

26367 13 + 96391608 - 96391679 1 72

ATG ...

MRT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5