Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

26127 12 - 51827472 - 51829235 3 75

CTG ...

LDR ...

26129 12 - 87309901 - 87312844 3 267

CTG ...

LVS ...

26131 12 + 4826799 - 4827056 2 141

ATG ...

MRT ...

26133 12 + 30585507 - 30587202 2 87

TTG ...

LPS ...

26135 12 + 70460377 - 70464406 3 123

CTG ...

LCT ...

26137 12 + 85825078 - 85826527 2 84

ATG ...

MRQ ...

26139 12 + 85825012 - 85826527 2 150

CTG ...

LGK ...

26141 12 - 110883966 - 110889086 3 114

CTG ...

LWA ...

26143 1 + 91527634 - 91527783 1 150

GTG ...

VEP ...

26145 12 + 8922254 - 8931643 2 57

ATG ...

MSA ...

26147 1 - 120119982 - 120120011 1 30

CTG ...

LNL ...

26149 1 - 164438296 - 164438499 1 204

TTG ...

LGW ...

26151 12 - 58959997 - 58967096 3 207

GTG ...

VFD ...

26154 12 - 86702281 - 86703280 2 285

GTG ...

VYT ...

26156 12 - 87239816 - 87241359 3 144

TTG ...

LCF ...

26159 12 + 17280612 - 17280960 2 78

CTG ...

LTS ...

26162 1 + 6248145 - 6248201 1 57

TTG ...

LDE ...

26164 12 + 70460546 - 70464406 2 42

TTG ...

LPQ ...

26166 1 - 135125220 - 135125456 1 237

CTG ...

LQA ...

26168 12 + 100199667 - 100202405 3 63

GTG ...

VQP ...

26170 1 + 179684236 - 179684307 1 72

TTG ...

LVK ...

26172 12 - 78857328 - 78861497 3 96

TTG ...

LSR ...

26174 12 - 111294101 - 111294974 3 213

TTG ...

LSV ...

26177 12 + 17279688 - 17280381 2 36

CTG ...

LIM ...

26179 12 + 70458847 - 70460346 2 63

GTG ...

VIK ...

26181 12 - 102413499 - 102423610 2 90

ATG ...

MAG ...

26183 12 + 17278617 - 17278873 2 66

ATG ...

MLR ...

26185 12 + 70458868 - 70460346 2 42

TTG ...

LNL ...

26187 12 - 78848488 - 78849784 2 57

GTG ...

VLP ...

26189 12 + 17277267 - 17278550 2 75

TTG ...

LVG ...

26191 12 - 91843260 - 91848996 2 42

CTG ...

LRG ...

26193 1 - 175625447 - 175625512 1 66

GTG ...

VLQ ...

26196 12 - 102413499 - 102423625 2 105

TTG ...

LWR ...

26198 1 - 179799203 - 179799280 1 78

GTG ...

VTI ...

26200 12 + 84136541 - 84138394 2 138

GTG ...

VFV ...

26202 12 - 78843606 - 78847850 4 168

TTG ...

LSF ...

26204 1 + 5084411 - 5084443 1 33

TTG ...

LKV ...

26207 12 - 31934420 - 31937027 2 78

TTG ...

LLE ...

26209 1 + 38017834 - 38017953 1 120

TTG ...

LAA ...

26211 12 - 85272823 - 85280108 3 123

ATG ...

MSH ...

26213 12 + 70453282 - 70456089 2 117

CTG ...

LDV ...

26215 12 - 58959997 - 58967123 3 234

TTG ...

LSV ...

26217 12 + 70460540 - 70464406 2 48

TTG ...

LLL ...

26219 12 - 84765364 - 84772824 2 60

CTG ...

LPA ...

26221 1 + 133131598 - 133131672 1 75

CTG ...

LGL ...

26223 12 + 84409159 - 84411044 3 105

GTG ...

VRL ...

26226 12 + 84136520 - 84138394 2 159

CTG ...

LPC ...

26228 1 + 182124814 - 182124864 1 51

CTG ...

LWA ...

26231 12 + 70460501 - 70464406 2 87

ATG ...

MTL ...

26233 12 - 87133418 - 87135512 2 69

CTG ...

LPF ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5