Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

26017 12 + 70943495 - 70947485 2 57

GTG ...

VFF ...

26019 12 + 83688260 - 83699617 4 207

CTG ...

LRA ...

26021 12 + 8935988 - 8936706 2 105

CTG ...

LIS ...

26023 12 + 111538519 - 111539449 2 72

TTG ...

LGL ...

26025 12 - 85350847 - 85354818 2 54

TTG ...

LKC ...

26028 12 + 4820670 - 4826759 2 45

ATG ...

MIY ...

26030 12 + 113153289 - 113153658 3 186

GTG ...

VTS ...

26032 1 + 75146939 - 75147055 1 117

TTG ...

LGP ...

26034 12 + 102899361 - 102900308 3 195

CTG ...

LRC ...

26036 12 - 85272809 - 85280031 2 60

TTG ...

LER ...

26038 12 + 17266642 - 17274044 3 252

CTG ...

LVL ...

26040 12 - 91814676 - 91815027 2 72

CTG ...

LSR ...

26043 12 - 84760752 - 84765300 2 165

GTG ...

VST ...

26045 12 - 91826522 - 91826701 2 93

TTG ...

LAF ...

26047 12 + 100199664 - 100202405 3 66

CTG ...

LVQ ...

26049 12 + 110616688 - 110617660 3 279

CTG ...

LYP ...

26051 12 + 17279694 - 17280381 2 30

ATG ...

MPL ...

26053 1 + 172129254 - 172129364 1 111

CTG ...

LAE ...

26056 12 + 30588497 - 30588652 2 72

TTG ...

LTP ...

26058 12 + 85825054 - 85826527 2 108

CTG ...

LPA ...

26060 1 + 191596199 - 191596408 1 210

CTG ...

LKL ...

26062 12 + 102899337 - 102900308 3 219

CTG ...

LSQ ...

26064 12 - 78857328 - 78861509 3 108

TTG ...

LRS ...

26066 1 - 20814795 - 20814833 1 39

CTG ...

LLV ...

26069 12 + 17277270 - 17278550 2 72

GTG ...

VGG ...

26071 12 - 81472235 - 81474637 2 168

TTG ...

LEK ...

26074 1 - 172066674 - 172066781 1 108

GTG ...

VGF ...

26076 12 + 4826769 - 4827056 2 171

CTG ...

LKP ...

26078 12 + 83648210 - 83651684 3 243

GTG ...

VLS ...

26081 12 - 78843606 - 78847865 4 183

ATG ...

MLV ...

26083 12 + 17278608 - 17278873 2 75

TTG ...

LSF ...

26085 12 - 81573830 - 81581935 5 294

GTG ...

VLG ...

26087 12 + 32967687 - 32969216 2 93

CTG ...

LLY ...

26089 1 + 105753573 - 105753623 1 51

TTG ...

LTT ...

26091 12 - 85350847 - 85354806 2 42

TTG ...

LRA ...

26093 12 + 8936779 - 8938147 2 48

TTG ...

LKH ...

26095 12 - 78848488 - 78849766 2 39

TTG ...

LNI ...

26098 12 + 84136505 - 84138394 2 174

CTG ...

LKL ...

26100 1 - 156432839 - 156432925 1 87

GTG ...

VVH ...

26103 12 + 8936773 - 8938147 2 54

CTG ...

LPL ...

26105 12 + 28677811 - 28679602 2 300

CTG ...

LEK ...

26108 12 + 112647969 - 112649071 3 105

GTG ...

VAL ...

26110 1 + 128252209 - 128252256 1 48

ATG ...

MSN ...

26112 12 + 17278629 - 17278873 2 54

GTG ...

VDT ...

26114 12 + 111538537 - 111539449 2 54

TTG ...

LTK ...

26116 1 + 172129209 - 172129364 1 156

CTG ...

LAS ...

26118 12 + 8936006 - 8936706 2 87

ATG ...

MTS ...

26120 1 + 185338134 - 185338289 1 156

TTG ...

LMR ...

26122 12 + 32967576 - 32969216 2 204

GTG ...

VCD ...

26124 12 + 70460495 - 70464406 2 93

TTG ...

LFM ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5