Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

25904 12 + 102899356 - 102899511 1 156

CTG ...

LTC ...

25906 12 - 21333950 - 21334012 1 63

CTG ...

LNN ...

25908 12 - 85279978 - 85280031 1 54

TTG ...

LER ...

25910 12 + 70453164 - 70453313 1 150

CTG ...

LTW ...

25912 12 + 112036409 - 112036648 1 240

GTG ...

VNL ...

25914 12 + 17279627 - 17279740 1 114

GTG ...

VDY ...

25916 12 + 110659178 - 110659306 1 129

CTG ...

LTV ...

25918 12 + 98785721 - 98785753 1 33

ATG ...

MDS ...

25920 12 + 3426923 - 3426973 1 51

ATG ...

MAA ...

25922 12 + 17278815 - 17278979 1 165

GTG ...

VRS ...

25924 12 + 113144101 - 113144193 1 93

GTG ...

VVR ...

25926 1 - 65025527 - 65025628 1 102

CTG ...

LAI ...

25929 12 + 100199664 - 100199720 1 57

CTG ...

LVQ ...

25931 12 + 112036361 - 112036648 1 288

GTG ...

VEF ...

25933 12 - 108875110 - 108875274 1 165

GTG ...

VPL ...

25935 12 + 113143476 - 113143658 1 183

CTG ...

LGK ...

25937 1 - 179752303 - 179752506 1 204

CTG ...

LAG ...

25939 12 + 30588524 - 30588652 2 45

TTG ...

LCS ...

25941 1 + 75509859 - 75510068 1 210

CTG ...

LLS ...

25943 12 + 84136511 - 84138394 2 168

CTG ...

LAE ...

25947 12 - 78843606 - 78847814 3 132

ATG ...

MKP ...

25949 12 - 78857328 - 78861512 3 111

GTG ...

VLR ...

25951 1 - 156432839 - 156432949 1 111

CTG ...

LAV ...

25954 12 + 8934909 - 8936706 3 186

TTG ...

LTS ...

25956 12 + 17266645 - 17274044 3 249

GTG ...

VLG ...

25959 1 + 93506985 - 93507086 1 102

TTG ...

LQE ...

25961 1 - 151500710 - 151500778 1 69

TTG ...

LIL ...

25964 12 + 84285463 - 84292299 2 30

ATG ...

MPR ...

25967 12 + 78862103 - 78866546 3 99

TTG ...

LVF ...

25970 12 + 32967660 - 32969216 2 120

GTG ...

VFL ...

25973 12 - 87350359 - 87355528 2 30

TTG ...

LET ...

25975 12 - 86702281 - 86703265 2 270

CTG ...

LPQ ...

25977 12 + 17277225 - 17278550 2 117

ATG ...

MPP ...

25979 12 - 87133418 - 87135497 2 54

TTG ...

LTQ ...

25982 12 + 32967585 - 32969216 2 195

GTG ...

VNW ...

25984 1 + 75142929 - 75143132 1 204

CTG ...

LSL ...

25986 1 + 134599133 - 134599222 1 90

ATG ...

MTV ...

25988 12 + 32967666 - 32969216 2 114

CTG ...

LYC ...

25990 12 + 55407532 - 55408029 2 60

GTG ...

VQL ...

25994 12 + 8936761 - 8938147 2 66

TTG ...

LPC ...

25996 12 + 17277279 - 17278550 2 63

GTG ...

VVG ...

25998 1 + 45822466 - 45822642 1 177

TTG ...

LPT ...

26000 12 + 102899409 - 102900308 2 147

GTG ...

VQS ...

26002 12 + 17280634 - 17280943 2 39

GTG ...

VGV ...

26004 12 + 113153325 - 113153658 3 150

CTG ...

LKC ...

26007 1 - 161876369 - 161876581 1 213

GTG ...

VKR ...

26009 1 - 153487529 - 153487618 1 90

GTG ...

VFF ...

26011 12 + 17277237 - 17278550 2 105

GTG ...

VPC ...

26013 1 - 161244175 - 161244303 1 129

TTG ...

LPF ...

26015 1 + 43954680 - 43954781 1 102

CTG ...

LNY ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5