Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

27091 13 + 34178001 - 34178102 1 102

GTG ...

VFV ...

27094 13 + 100654247 - 100654339 1 93

CTG ...

LKY ...

27096 13 + 119705123 - 119705155 1 33

GTG ...

VWH ...

27098 13 - 26769764 - 26769913 1 150

ATG ...

MRS ...

27100 13 - 96666027 - 96666197 1 171

CTG ...

LTI ...

27102 13 + 24802540 - 24802695 1 156

ATG ...

MTP ...

27104 13 - 58263938 - 58264150 1 213

CTG ...

LQS ...

27106 13 - 66929868 - 66930068 1 201

CTG ...

LLS ...

27109 13 + 97161133 - 97161171 1 39

CTG ...

LPS ...

27111 13 + 23739147 - 23739347 1 201

GTG ...

VPP ...

27113 1 - 54990445 - 54990486 1 42

TTG ...

LLK ...

27115 13 - 23934015 - 23934134 1 120

GTG ...

VLL ...

27117 13 + 100655283 - 100655330 1 48

GTG ...

VLT ...

27119 13 - 24761809 - 24761871 1 63

GTG ...

VWC ...

27121 13 + 53394189 - 53394308 1 120

ATG ...

MGN ...

27124 13 - 66928206 - 66928316 1 111

ATG ...

MTC ...

27126 13 - 100477078 - 100477206 1 129

TTG ...

LDN ...

27128 13 + 59608791 - 59608862 1 72

GTG ...

VKF ...

27130 1 - 134234265 - 134234327 1 63

CTG ...

LPT ...

27132 13 - 94208198 - 94208233 1 36

CTG ...

LVS ...

27134 13 + 96391629 - 96391679 1 51

ATG ...

MWL ...

27136 1 - 53760978 - 53761085 1 108

CTG ...

LNI ...

27139 13 - 58263938 - 58264084 1 147

GTG ...

VAL ...

27141 13 + 24802471 - 24802695 1 225

ATG ...

MVL ...

27143 13 - 30540745 - 30540891 1 147

GTG ...

VYP ...

27145 13 + 114825330 - 114825365 1 36

GTG ...

VRH ...

27148 13 - 90883551 - 90883700 1 150

CTG ...

LDR ...

27150 13 - 66929868 - 66930095 1 228

GTG ...

VLP ...

27152 13 + 119699696 - 119699800 1 105

ATG ...

MQR ...

27154 1 + 172104213 - 172104269 1 57

CTG ...

LDF ...

27156 13 - 49237410 - 49237508 1 99

GTG ...

VVA ...

27158 1 + 34443819 - 34443974 1 156

CTG ...

LCN ...

27160 1 + 134630641 - 134630727 1 87

ATG ...

MLK ...

27162 1 + 60105385 - 60105420 1 36

GTG ...

VAM ...

27164 13 + 23934496 - 23934630 1 135

GTG ...

VPR ...

27167 13 + 75707548 - 75707649 1 102

ATG ...

MAV ...

27169 13 - 58394581 - 58394649 1 69

TTG ...

LTE ...

27171 13 - 54468529 - 54468636 1 108

GTG ...

VHS ...

27173 13 - 58263938 - 58264123 1 186

CTG ...

LPL ...

27175 1 + 153447873 - 153447998 1 126

CTG ...

LTL ...

27177 13 - 8847604 - 8847675 1 72

TTG ...

LLW ...

27179 13 + 24802123 - 24802164 1 42

GTG ...

VRT ...

27181 13 - 56128280 - 56128456 1 177

CTG ...

LSP ...

27183 13 + 56723747 - 56724022 1 276

CTG ...

LEK ...

27185 13 + 20564529 - 20564591 1 63

CTG ...

LKI ...

27187 13 - 62872686 - 62872772 1 87

TTG ...

LSV ...

27189 13 + 41001367 - 41001417 1 51

TTG ...

LGS ...

27191 13 + 41008030 - 41008140 1 111

CTG ...

LKF ...

27193 13 - 23762340 - 23762372 1 33

TTG ...

LLS ...

27196 13 - 56128280 - 56128462 1 183

CTG ...

LGL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5