Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

25590 12 + 76875071 - 76875127 1 57

CTG ...

LHS ...

25592 12 + 70453152 - 70453313 1 162

CTG ...

LGE ...

25594 12 + 112032745 - 112032813 1 69

GTG ...

VRE ...

25596 12 - 111966920 - 111966952 1 33

GTG ...

VLP ...

25598 12 + 32967576 - 32967797 1 222

GTG ...

VCD ...

25600 12 - 21279419 - 21279481 1 63

ATG ...

MVK ...

25603 12 + 106036570 - 106036632 1 63

CTG ...

LED ...

25606 12 + 102899332 - 102899511 1 180

TTG ...

LLC ...

25608 12 - 91830648 - 91830776 1 129

TTG ...

LFG ...

25610 12 + 112034624 - 112034686 1 63

CTG ...

LQS ...

25612 1 + 58586508 - 58586591 1 84

ATG ...

MSS ...

25615 12 + 9016039 - 9016155 1 117

TTG ...

LIE ...

25617 1 - 164457766 - 164458026 1 261

CTG ...

LLR ...

25619 12 + 105784846 - 105784881 1 36

ATG ...

MPR ...

25621 12 + 84427038 - 84427208 1 171

CTG ...

LAS ...

25624 12 - 91823516 - 91823575 1 60

CTG ...

LHL ...

25626 12 + 84426957 - 84427208 1 252

CTG ...

LAK ...

25628 12 + 113074884 - 113074934 1 51

GTG ...

VVG ...

25630 12 + 100199556 - 100199612 1 57

GTG ...

VVP ...

25632 1 - 92470758 - 92470904 1 147

CTG ...

LHE ...

25634 12 - 31351297 - 31351377 1 81

GTG ...

VKT ...

25636 12 + 70456033 - 70456089 1 57

TTG ...

LSE ...

25638 12 + 30584489 - 30584557 1 69

TTG ...

LGS ...

25640 12 + 98785670 - 98785753 1 84

CTG ...

LHI ...

25643 12 - 54861539 - 54861592 1 54

ATG ...

MLC ...

25645 12 + 112648982 - 112649071 1 90

ATG ...

MPT ...

25647 12 + 9016474 - 9016644 1 171

CTG ...

LYT ...

25649 12 - 69196974 - 69197102 1 129

ATG ...

MEP ...

25651 12 + 104101121 - 104101216 1 96

ATG ...

MKQ ...

25653 12 - 87350207 - 87350380 1 174

CTG ...

LDK ...

25655 12 + 72761402 - 72761476 1 75

ATG ...

MSP ...

25657 12 - 31937166 - 31937216 1 51

CTG ...

LVQ ...

25660 12 + 70952991 - 70953026 1 36

CTG ...

LVQ ...

25662 12 + 80644251 - 80644358 1 108

ATG ...

MAA ...

25664 12 + 86962455 - 86962667 1 213

CTG ...

LEI ...

25666 12 - 81474581 - 81474625 1 45

TTG ...

LKV ...

25668 12 - 101082955 - 101082999 1 45

ATG ...

MRA ...

25670 12 + 105808564 - 105808674 1 111

TTG ...

LFA ...

25672 12 + 80644266 - 80644358 1 93

TTG ...

LAT ...

25674 1 + 153433289 - 153433393 1 105

CTG ...

LGE ...

25676 12 + 9024236 - 9024364 1 129

GTG ...

VKK ...

25678 12 + 17266624 - 17266695 1 72

GTG ...

VIG ...

25680 12 + 111993792 - 111993947 1 156

GTG ...

VLD ...

25682 12 + 69307203 - 69307325 1 123

GTG ...

VCP ...

25684 12 - 112656922 - 112656966 1 45

GTG ...

VQW ...

25686 12 + 17278824 - 17278979 1 156

CTG ...

LFL ...

25688 1 + 151428803 - 151428874 1 72

CTG ...

LCA ...

25691 12 + 112032682 - 112032813 1 132

GTG ...

VLA ...

25693 12 + 104101788 - 104101886 1 99

GTG ...

VLW ...

25695 12 - 3309490 - 3309717 1 228

CTG ...

LRG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5