Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

25697 1 + 153436090 - 153436140 1 51

GTG ...

VML ...

25699 12 + 108554987 - 108555058 1 72

ATG ...

MAG ...

25701 12 + 100199550 - 100199612 1 63

GTG ...

VSV ...

25703 12 + 110641105 - 110641227 1 123

GTG ...

VEH ...

25705 12 + 3235791 - 3235892 1 102

CTG ...

LAS ...

25707 12 + 76782838 - 76782891 1 54

GTG ...

VAK ...

25709 1 - 135430260 - 135430382 1 123

GTG ...

VAQ ...

25711 12 + 17274429 - 17274566 1 138

CTG ...

LGG ...

25713 1 + 45818890 - 45818928 1 39

GTG ...

VAQ ...

25715 12 + 113143467 - 113143658 1 192

GTG ...

VSS ...

25717 12 + 32967649 - 32967741 1 93

TTG ...

LQS ...

25719 12 + 104101725 - 104101886 1 162

ATG ...

MGW ...

25721 1 - 135394110 - 135394244 1 135

GTG ...

VME ...

25724 12 + 4820670 - 4820726 1 57

ATG ...

MIY ...

25726 12 + 108814651 - 108814800 1 150

CTG ...

LHT ...

25728 12 + 76782831 - 76782905 1 75

CTG ...

LLC ...

25730 1 - 55007453 - 55007599 1 147

CTG ...

LRE ...

25732 12 + 76920139 - 76920207 1 69

CTG ...

LQK ...

25734 1 + 86130697 - 86130750 1 54

CTG ...

LEV ...

25736 1 + 186968423 - 186968533 1 111

ATG ...

MSR ...

25738 12 + 9004095 - 9004154 1 60

CTG ...

LEI ...

25740 12 + 32967666 - 32967797 1 132

CTG ...

LYC ...

25742 12 + 83676085 - 83676231 1 147

CTG ...

LME ...

25744 12 + 17280602 - 17280643 1 42

CTG ...

LKL ...

25746 12 - 84970757 - 84970822 1 66

CTG ...

LAE ...

25749 12 - 91569793 - 91569822 1 30

CTG ...

LLP ...

25752 12 + 112001748 - 112001828 1 81

GTG ...

VIT ...

25754 12 + 17277279 - 17277308 1 30

GTG ...

VVG ...

25756 12 - 91809844 - 91809966 1 123

TTG ...

LGT ...

25758 12 + 55410213 - 55410296 1 84

CTG ...

LCK ...

25760 12 + 55407532 - 55407567 1 36

GTG ...

VQL ...

25762 12 + 83520568 - 83520600 1 33

CTG ...

LGA ...

25764 12 + 72536393 - 72536533 1 141

ATG ...

MGT ...

25766 12 + 32965401 - 32965436 1 36

GTG ...

VVG ...

25768 12 + 59018051 - 59018158 1 108

CTG ...

LGE ...

25770 12 + 55412228 - 55412374 1 147

GTG ...

VYK ...

25772 12 + 8936711 - 8936782 1 72

TTG ...

LCL ...

25774 12 - 84757095 - 84757187 1 93

TTG ...

LKM ...

25776 12 + 85746649 - 85746693 1 45

GTG ...

VAR ...

25778 12 + 8987341 - 8987427 1 87

CTG ...

LKI ...

25780 12 + 17270464 - 17270550 1 87

TTG ...

LTP ...

25782 12 - 110883966 - 110884049 1 84

TTG ...

LGS ...

25784 12 + 105032941 - 105032976 1 36

ATG ...

MRP ...

25786 12 + 70940798 - 70940842 1 45

GTG ...

VWI ...

25788 12 + 83646173 - 83646313 1 141

TTG ...

LGA ...

25790 12 + 84372295 - 84372345 1 51

CTG ...

LGH ...

25792 12 - 86078736 - 86078771 1 36

ATG ...

MAE ...

25795 12 - 85819494 - 85819538 1 45

CTG ...

LDA ...

25797 12 + 8931692 - 8931778 1 87

CTG ...

LST ...

25799 1 - 54998184 - 54998222 1 39

GTG ...

VQQ ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5