Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

25483 12 + 17279694 - 17279723 1 30

ATG ...

MPL ...

25485 12 + 83668465 - 83668512 1 48

ATG ...

MRR ...

25488 12 + 102899337 - 102899495 1 159

CTG ...

LSQ ...

25490 12 - 65069947 - 65070003 1 57

CTG ...

LLI ...

25492 12 + 86962482 - 86962667 1 186

TTG ...

LIR ...

25494 12 + 84979425 - 84979466 1 42

CTG ...

LKL ...

25497 12 + 4826811 - 4826900 1 90

TTG ...

LML ...

25499 1 + 134631256 - 134631402 1 147

ATG ...

MAA ...

25501 12 + 99911724 - 99911828 1 105

CTG ...

LAL ...

25503 12 + 11456099 - 11456146 1 48

GTG ...

VAC ...

25505 12 + 9008537 - 9008713 1 177

GTG ...

VTD ...

25507 12 - 85272682 - 85272798 1 117

CTG ...

LGS ...

25509 12 - 102423581 - 102423625 1 45

TTG ...

LWR ...

25511 12 + 100199683 - 100199766 1 84

CTG ...

LLR ...

25513 12 + 86962467 - 86962667 1 201

CTG ...

LKT ...

25515 12 + 113144017 - 113144193 1 177

GTG ...

VNI ...

25517 12 + 8987320 - 8987427 1 108

CTG ...

LSW ...

25519 12 + 70464420 - 70464470 1 51

TTG ...

LPL ...

25521 12 + 8987290 - 8987427 1 138

TTG ...

LKV ...

25523 12 + 86952769 - 86952936 1 168

GTG ...

VLR ...

25525 12 + 102899386 - 102899511 1 126

CTG ...

LLF ...

25527 12 + 104101142 - 104101216 1 75

GTG ...

VET ...

25529 12 + 9018135 - 9018326 1 192

CTG ...

LQL ...

25532 12 + 59179957 - 59180016 1 60

CTG ...

LSP ...

25534 1 - 65032617 - 65032679 1 63

TTG ...

LTW ...

25537 12 + 72536429 - 72536533 1 105

CTG ...

LLA ...

25539 12 + 9027501 - 9027542 1 42

ATG ...

MKT ...

25542 12 + 70460540 - 70460584 1 45

TTG ...

LLL ...

25544 12 + 76405057 - 76405173 1 117

ATG ...

MSP ...

25546 12 + 76773291 - 76773401 1 111

CTG ...

LNF ...

25548 12 - 3309476 - 3309547 1 72

CTG ...

LLS ...

25550 12 + 111758902 - 111758976 1 75

GTG ...

VAR ...

25552 12 + 17278553 - 17278648 1 96

CTG ...

LTD ...

25554 12 + 17277267 - 17277308 1 42

TTG ...

LVG ...

25556 1 - 153478004 - 153478171 1 168

GTG ...

VDL ...

25558 12 + 104101157 - 104101216 1 60

CTG ...

LRS ...

25560 12 + 76404538 - 76404720 1 183

CTG ...

LPA ...

25562 12 + 55410204 - 55410296 1 93

GTG ...

VDM ...

25564 12 + 85220137 - 85220265 1 129

CTG ...

LHK ...

25567 12 + 9016441 - 9016644 1 204

CTG ...

LLA ...

25569 12 + 8987281 - 8987427 1 147

CTG ...

LGT ...

25571 12 - 102403423 - 102403488 1 66

ATG ...

MSS ...

25573 1 - 178330158 - 178330295 1 138

GTG ...

VVA ...

25575 12 + 9016021 - 9016155 1 135

CTG ...

LRD ...

25577 1 - 135123898 - 135124176 1 279

ATG ...

MEV ...

25579 12 + 99911721 - 99911828 1 108

TTG ...

LLA ...

25581 12 + 112007540 - 112007599 1 60

GTG ...

VSE ...

25583 1 - 75501951 - 75502238 1 288

GTG ...

VSG ...

25585 12 + 86082576 - 86082644 1 69

CTG ...

LPR ...

25588 12 + 70460495 - 70460584 1 90

TTG ...

LFM ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5