Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

25165 12 - 110883966 - 110884010 1 45

GTG ...

VRG ...

25168 12 + 8931707 - 8931778 1 72

ATG ...

MKS ...

25170 12 - 91833017 - 91833163 1 147

CTG ...

LDK ...

25172 12 - 111966920 - 111966949 1 30

TTG ...

LPV ...

25174 12 + 17273926 - 17273967 1 42

GTG ...

VFC ...

25176 12 - 81480898 - 81480999 1 102

CTG ...

LVV ...

25178 12 + 99945309 - 99945371 1 63

GTG ...

VPY ...

25180 12 - 44206950 - 44207012 1 63

CTG ...

LSL ...

25183 12 + 69372765 - 69372893 1 129

ATG ...

MPP ...

25185 12 + 112042803 - 112042952 1 150

CTG ...

LVK ...

25187 12 + 11456117 - 11456146 1 30

CTG ...

LAC ...

25190 12 + 84427170 - 84427208 1 39

GTG ...

VNQ ...

25192 12 + 9016540 - 9016644 1 105

CTG ...

LGN ...

25194 1 + 172121246 - 172121428 1 183

CTG ...

LPV ...

25196 1 - 165187965 - 165188036 1 72

GTG ...

VPR ...

25198 12 + 4820679 - 4820726 1 48

TTG ...

LGN ...

25200 12 + 32974160 - 32974189 1 30

GTG ...

VVG ...

25202 12 + 17278544 - 17278648 1 105

GTG ...

VVE ...

25204 1 + 191583195 - 191583383 1 189

CTG ...

LCV ...

25206 12 + 32967537 - 32967797 1 261

TTG ...

LNQ ...

25208 12 + 70961952 - 70961993 1 42

CTG ...

LVL ...

25210 12 - 101082765 - 101082794 1 30

ATG ...

MCP ...

25212 12 + 99911697 - 99911828 1 132

CTG ...

LCS ...

25214 1 + 38991253 - 38991318 1 66

ATG ...

MQT ...

25216 12 + 105823642 - 105823698 1 57

CTG ...

LLP ...

25218 1 + 70724862 - 70724942 1 81

GTG ...

VHS ...

25220 1 - 36600077 - 36600199 1 123

CTG ...

LSW ...

25222 12 + 113153325 - 113153390 1 66

CTG ...

LKC ...

25225 12 + 103434277 - 103434333 1 57

GTG ...

VDL ...

25227 12 + 105823618 - 105823698 1 81

GTG ...

VKR ...

25229 12 + 9019888 - 9020043 1 156

GTG ...

VQY ...

25231 12 + 80644287 - 80644358 1 72

CTG ...

LAE ...

25233 12 + 76887733 - 76887882 1 150

GTG ...

VCQ ...

25235 12 - 8499747 - 8499821 1 75

ATG ...

MPL ...

25237 12 + 72536411 - 72536533 1 123

CTG ...

LEA ...

25239 12 - 84443725 - 84443772 1 48

ATG ...

MPH ...

25242 12 + 105784733 - 105784768 1 36

ATG ...

MLG ...

25244 12 + 105032929 - 105032976 1 48

GTG ...

VFA ...

25247 12 + 9005797 - 9005868 1 72

GTG ...

VDG ...

25249 12 + 112068191 - 112068280 1 90

CTG ...

LIM ...

25251 12 + 112032719 - 112032748 1 30

TTG ...

LGS ...

25253 1 + 134599130 - 134599222 1 93

GTG ...

VMT ...

25255 12 + 105818790 - 105818903 1 114

GTG ...

VES ...

25257 12 + 17280928 - 17280960 1 33

CTG ...

LEP ...

25259 12 + 8989926 - 8990135 1 210

GTG ...

VVY ...

25261 12 + 32834951 - 32835034 1 84

CTG ...

LSS ...

25264 12 + 17280945 - 17281073 1 129

CTG ...

LEN ...

25266 12 - 21279419 - 21279493 1 75

CTG ...

LDR ...

25268 12 + 84428362 - 84428448 1 87

GTG ...

VDI ...

25270 12 + 70460501 - 70460584 1 84

ATG ...

MTL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5