Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

25052 12 + 76887745 - 76887882 1 138

CTG ...

LEL ...

25054 1 + 34443662 - 34443709 1 48

CTG ...

LLV ...

25056 1 - 10034043 - 10034126 1 84

TTG ...

LRM ...

25058 12 + 86952835 - 86952936 1 102

CTG ...

LSA ...

25060 12 - 31928573 - 31928611 1 39

CTG ...

LLE ...

25063 12 - 14150346 - 14150399 1 54

GTG ...

VST ...

25065 12 + 99911673 - 99911828 1 156

CTG ...

LGP ...

25068 1 - 134234265 - 134234375 1 111

GTG ...

VPS ...

25070 12 + 32974135 - 32974170 1 36

TTG ...

LLL ...

25072 1 + 45311767 - 45311832 1 66

GTG ...

VEP ...

25074 12 + 9016531 - 9016644 1 114

GTG ...

VKL ...

25076 12 - 81532842 - 81532895 1 54

CTG ...

LTA ...

25079 1 + 90610119 - 90610253 1 135

CTG ...

LVS ...

25081 1 + 191340730 - 191340882 1 153

TTG ...

LPF ...

25083 12 + 112063588 - 112063623 1 36

TTG ...

LQE ...

25085 12 + 84372289 - 84372345 1 57

CTG ...

LGL ...

25088 12 - 102742230 - 102742457 1 228

TTG ...

LQK ...

25090 12 + 110659211 - 110659306 1 96

TTG ...

LSC ...

25093 12 + 112042689 - 112042952 1 264

TTG ...

LEF ...

25095 12 + 17280608 - 17280643 1 36

CTG ...

LAD ...

25098 12 - 110693074 - 110693103 1 30

CTG ...

LLL ...

25101 12 + 100199559 - 100199612 1 54

GTG ...

VPL ...

25103 12 + 77277392 - 77277445 1 54

CTG ...

LVV ...

25105 12 + 59013534 - 59013617 1 84

GTG ...

VEP ...

25107 12 - 111966920 - 111966955 1 36

TTG ...

LVL ...

25109 12 - 8499747 - 8499830 1 84

GTG ...

VHR ...

25112 12 + 111758932 - 111758976 1 45

GTG ...

VRM ...

25114 1 + 171461225 - 171461266 1 42

GTG ...

VSP ...

25116 12 + 32967613 - 32967741 1 129

GTG ...

VIT ...

25118 12 - 108875110 - 108875268 1 159

TTG ...

LVI ...

25121 12 + 100199667 - 100199720 1 54

GTG ...

VQP ...

25123 1 + 45822925 - 45822978 1 54

TTG ...

LCS ...

25125 12 - 101809923 - 101809964 1 42

ATG ...

MNA ...

25127 12 - 14150186 - 14150368 1 183

CTG ...

LRA ...

25130 12 - 102423581 - 102423610 1 30

ATG ...

MAG ...

25132 12 + 112032685 - 112032813 1 129

CTG ...

LAG ...

25134 12 + 8936717 - 8936782 1 66

TTG ...

LEL ...

25136 12 - 54861195 - 54861224 1 30

GTG ...

VAS ...

25138 12 + 9018114 - 9018326 1 213

TTG ...

LGD ...

25140 12 - 85272617 - 85272664 1 48

ATG ...

MRK ...

25142 12 + 85220164 - 85220265 1 102

CTG ...

LSE ...

25144 1 - 84814904 - 84814966 1 63

ATG ...

MVV ...

25147 12 + 8922254 - 8922298 1 45

ATG ...

MSA ...

25149 12 + 4817687 - 4817770 1 84

CTG ...

LAV ...

25151 12 - 91814960 - 91815049 1 90

GTG ...

VVQ ...

25153 12 + 76782834 - 76782905 1 72

TTG ...

LCG ...

25155 12 - 85269388 - 85269423 1 36

ATG ...

MCP ...

25158 12 + 84426948 - 84427208 1 261

GTG ...

VKR ...

25160 12 - 8499747 - 8499815 1 69

CTG ...

LRP ...

25162 1 + 39535972 - 39536007 1 36

CTG ...

LGQ ...

Previous 218 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5