Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

24942 1 - 92470758 - 92470940 1 183

TTG ...

LAA ...

24945 12 - 81474581 - 81474619 1 39

GTG ...

VNK ...

24947 12 + 112042782 - 112042952 1 171

TTG ...

LVG ...

24949 12 + 76773336 - 76773401 1 66

CTG ...

LIT ...

24951 1 + 153433274 - 153433393 1 120

TTG ...

LVD ...

24953 12 + 17278494 - 17278550 1 57

TTG ...

LSC ...

24955 12 + 110640568 - 110640792 1 225

GTG ...

VAA ...

24957 12 + 72761387 - 72761476 1 90

GTG ...

VGR ...

24959 1 + 172319295 - 172319408 1 114

GTG ...

VDT ...

24962 12 + 8743934 - 8744032 1 99

TTG ...

LED ...

24964 12 + 101149115 - 101149282 1 168

CTG ...

LLR ...

24967 12 + 59176357 - 59176473 1 117

TTG ...

LGR ...

24970 12 + 86962515 - 86962667 1 153

CTG ...

LDQ ...

24972 12 + 85220098 - 85220265 1 168

CTG ...

LHG ...

24974 12 + 77277386 - 77277445 1 60

ATG ...

MAL ...

24976 12 + 64965940 - 64966077 1 138

ATG ...

MVP ...

24978 12 + 17280915 - 17281073 1 159

CTG ...

LWT ...

24980 12 + 57238384 - 57238416 1 33

GTG ...

VAV ...

24983 12 + 83520523 - 83520600 1 78

GTG ...

VRQ ...

24985 1 + 171437610 - 171437705 1 96

CTG ...

LCP ...

24987 12 + 9024254 - 9024364 1 111

CTG ...

LSA ...

24989 12 + 9008582 - 9008713 1 132

CTG ...

LER ...

24991 12 + 99945243 - 99945371 1 129

CTG ...

LDT ...

24994 12 + 112042806 - 112042952 1 147

GTG ...

VKV ...

24996 1 + 135746725 - 135746835 1 111

CTG ...

LDT ...

24998 12 + 112648994 - 112649071 1 78

GTG ...

VRR ...

25000 12 - 31630789 - 31630845 1 57

TTG ...

LEQ ...

25003 12 + 84423472 - 84423507 1 36

CTG ...

LAE ...

25005 12 - 66283913 - 66284038 1 126

GTG ...

VPT ...

25008 12 - 91572583 - 91572615 1 33

TTG ...

LFL ...

25010 12 + 69300264 - 69300299 1 36

CTG ...

LWI ...

25012 12 + 32965433 - 32965504 1 72

GTG ...

VNC ...

25014 12 + 76773266 - 76773322 1 57

CTG ...

LSG ...

25016 1 + 151361597 - 151361653 1 57

ATG ...

MWR ...

25018 12 + 85826459 - 85826527 1 69

GTG ...

VPS ...

25020 12 + 101149118 - 101149282 1 165

TTG ...

LRE ...

25022 12 + 9004029 - 9004154 1 126

GTG ...

VIA ...

25024 1 - 177796304 - 177796411 1 108

CTG ...

LPC ...

25026 12 + 80644305 - 80644358 1 54

ATG ...

MGS ...

25028 12 + 55414391 - 55414441 1 51

GTG ...

VFF ...

25030 12 + 110660886 - 110661032 1 147

TTG ...

LAM ...

25032 12 + 111039391 - 111039432 1 42

ATG ...

MRA ...

25034 12 + 76887835 - 76887882 1 48

CTG ...

LCI ...

25036 1 + 172119242 - 172119388 1 147

CTG ...

LIQ ...

25038 12 - 69198068 - 69198295 1 228

GTG ...

VGH ...

25041 1 - 92467337 - 92467453 1 117

TTG ...

LER ...

25043 12 + 85824839 - 85824874 1 36

CTG ...

LGW ...

25045 12 + 32967628 - 32967741 1 114

CTG ...

LHS ...

25047 1 + 63177741 - 63177920 1 180

GTG ...

VSL ...

25049 12 + 3772651 - 3772707 1 57

CTG ...

LCV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5