Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

24826 12 + 83648207 - 83648308 1 102

TTG ...

LVL ...

24829 12 + 111713378 - 111713422 1 45

GTG ...

VSA ...

24832 12 + 9024263 - 9024364 1 102

CTG ...

LLI ...

24834 12 + 108806508 - 108806645 1 138

GTG ...

VVE ...

24837 12 + 4769457 - 4769486 1 30

CTG ...

LRQ ...

24840 12 + 80946610 - 80946732 1 123

GTG ...

VFI ...

24843 1 - 86357338 - 86357451 1 114

TTG ...

LSS ...

24845 12 + 70863914 - 70863949 1 36

CTG ...

LWG ...

24848 12 + 113074848 - 113074934 1 87

ATG ...

MRA ...

24850 12 - 14151793 - 14151975 1 183

CTG ...

LGT ...

24852 12 + 70952994 - 70953026 1 33

GTG ...

VQL ...

24854 12 - 91809844 - 91810032 1 189

CTG ...

LDM ...

24856 12 - 81582644 - 81582685 1 42

CTG ...

LES ...

24859 12 + 76920091 - 76920207 1 117

GTG ...

VYN ...

24861 12 + 80945721 - 80945792 1 72

ATG ...

MAA ...

24864 12 + 84423439 - 84423507 1 69

TTG ...

LEQ ...

24866 12 + 105823591 - 105823698 1 108

TTG ...

LDM ...

24868 1 + 172104180 - 172104269 1 90

CTG ...

LHY ...

24870 12 - 81484989 - 81485072 1 84

CTG ...

LAP ...

24873 1 + 75146990 - 75147055 1 66

CTG ...

LGA ...

24875 12 - 86702281 - 86702433 1 153

CTG ...

LDR ...

24878 12 + 9022737 - 9022970 1 234

CTG ...

LAK ...

24880 12 + 76773354 - 76773401 1 48

CTG ...

LKE ...

24882 12 - 84772782 - 84772916 1 135

CTG ...

LLG ...

24884 12 + 100199536 - 100199589 1 54

GTG ...

VLG ...

24886 12 + 76405015 - 76405173 1 159

ATG ...

MRA ...

24888 12 - 81573830 - 81573931 1 102

TTG ...

LPE ...

24891 12 - 85819494 - 85819577 1 84

CTG ...

LHS ...

24894 12 + 102899409 - 102899495 1 87

GTG ...

VQS ...

24896 12 + 83681551 - 83681595 1 45

TTG ...

LIY ...

24898 12 + 110660850 - 110661032 1 183

CTG ...

LLL ...

24901 12 + 3960041 - 3960190 1 150

GTG ...

VLA ...

24903 12 + 80644218 - 80644358 1 141

GTG ...

VGV ...

24905 12 + 84426990 - 84427208 1 219

GTG ...

VEQ ...

24907 12 + 84428377 - 84428448 1 72

TTG ...

LTW ...

24909 12 + 112042848 - 112042952 1 105

GTG ...

VYR ...

24911 1 + 134424802 - 134424930 1 129

CTG ...

LKD ...

24913 12 + 9016549 - 9016644 1 96

CTG ...

LQS ...

24915 12 + 17277225 - 17277308 1 84

ATG ...

MPP ...

24917 12 + 8981121 - 8981204 1 84

GTG ...

VYE ...

24919 12 - 25095314 - 25095370 1 57

CTG ...

LNS ...

24922 12 + 70942269 - 70942313 1 45

TTG ...

LFS ...

24924 12 + 55414419 - 55414502 1 84

CTG ...

LST ...

24926 12 + 17278848 - 17278979 1 132

ATG ...

MGC ...

24928 12 - 54861539 - 54861604 1 66

ATG ...

MIA ...

24930 12 + 112648991 - 112649071 1 81

ATG ...

MVR ...

24933 12 + 83520538 - 83520600 1 63

ATG ...

MRV ...

24936 12 - 91823516 - 91823584 1 69

CTG ...

LGQ ...

24938 12 + 8922119 - 8922196 1 78

TTG ...

LNR ...

24940 12 + 72536432 - 72536533 1 102

CTG ...

LAG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5