Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

24712 12 + 70456024 - 70456089 1 66

GTG ...

VSC ...

24714 12 + 17279688 - 17279723 1 36

CTG ...

LIM ...

24716 12 + 103434283 - 103434333 1 51

TTG ...

LTG ...

24719 12 - 84772782 - 84772889 1 108

TTG ...

LQS ...

24721 12 + 3426941 - 3426973 1 33

GTG ...

VAA ...

24724 1 - 36443470 - 36443559 1 90

GTG ...

VMT ...

24726 12 + 70460546 - 70460584 1 39

TTG ...

LPQ ...

24728 12 + 85746640 - 85746693 1 54

CTG ...

LER ...

24731 12 + 76405105 - 76405173 1 69

GTG ...

VRA ...

24734 12 + 110640655 - 110640792 1 138

CTG ...

LVL ...

24736 12 - 102742230 - 102742490 1 261

CTG ...

LSA ...

24738 12 + 8981073 - 8981204 1 132

GTG ...

VVR ...

24740 12 + 105804946 - 105804993 1 48

TTG ...

LKM ...

24742 12 + 105818823 - 105818903 1 81

TTG ...

LEK ...

24744 12 + 110640538 - 110640792 1 255

GTG ...

VPQ ...

24746 12 - 85272682 - 85272720 1 39

GTG ...

VAG ...

24748 12 - 21279419 - 21279478 1 60

GTG ...

VKD ...

24751 12 + 72536492 - 72536533 1 42

GTG ...

VVP ...

24753 12 + 84426715 - 84426795 1 81

ATG ...

MIC ...

24756 12 + 76775607 - 76775657 1 51

CTG ...

LSS ...

24758 12 + 84428410 - 84428448 1 39

TTG ...

LLF ...

24760 12 - 85822084 - 85822191 1 108

CTG ...

LAG ...

24763 1 - 55019263 - 55019295 1 33

GTG ...

VEV ...

24765 12 + 112068242 - 112068280 1 39

CTG ...

LYQ ...

24767 12 + 8936006 - 8936086 1 81

ATG ...

MTS ...

24769 12 + 87449834 - 87449878 1 45

TTG ...

LHG ...

24772 12 + 105804955 - 105804993 1 39

TTG ...

LEG ...

24774 1 - 184822485 - 184822520 1 36

GTG ...

VEM ...

24776 12 + 55414431 - 55414502 1 72

CTG ...

LSI ...

24778 1 + 85905242 - 85905307 1 66

GTG ...

VCS ...

24780 12 + 4826799 - 4826900 1 102

ATG ...

MRT ...

24782 12 - 3309476 - 3309517 1 42

CTG ...

LLR ...

24784 12 + 17278837 - 17279028 1 192

CTG ...

LEP ...

24786 1 - 55012098 - 55012142 1 45

GTG ...

VPL ...

24788 12 - 58982564 - 58982629 1 66

GTG ...

VTQ ...

24791 12 + 110640625 - 110640792 1 168

CTG ...

LYT ...

24793 12 - 111963244 - 111963327 1 84

CTG ...

LGP ...

24796 1 - 151473124 - 151473291 1 168

ATG ...

MVT ...

24798 12 - 81474581 - 81474637 1 57

TTG ...

LEK ...

24801 12 - 54861539 - 54861580 1 42

ATG ...

MPR ...

24804 1 + 128151748 - 128151810 1 63

CTG ...

LKG ...

24807 12 - 91841588 - 91841830 1 243

GTG ...

VKD ...

24809 12 + 8982808 - 8982906 1 99

GTG ...

VTW ...

24811 12 + 76404976 - 76405173 1 198

CTG ...

LPI ...

24813 12 + 9016444 - 9016644 1 201

CTG ...

LAE ...

24815 12 + 102899430 - 102899495 1 66

CTG ...

LAT ...

24818 12 + 76406128 - 76406217 1 90

ATG ...

MKQ ...

24820 12 + 105818787 - 105818903 1 117

TTG ...

LVE ...

24822 12 + 85746631 - 85746693 1 63

CTG ...

LDS ...

24824 1 - 60097640 - 60097720 1 81

ATG ...

MCA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5