Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

24598 12 + 86962431 - 86962667 1 237

GTG ...

VVL ...

24601 12 + 72536381 - 72536533 1 153

TTG ...

LIL ...

24604 12 + 83699549 - 83699617 1 69

CTG ...

LSS ...

24607 12 + 83674495 - 83674770 1 276

TTG ...

LRP ...

24610 12 + 35047212 - 35047370 1 159

ATG ...

MAA ...

24613 12 - 65069947 - 65070048 1 102

TTG ...

LQS ...

24616 1 + 66700985 - 66701032 1 48

CTG ...

LDS ...

24618 12 - 21333950 - 21334069 1 120

GTG ...

VCG ...

24620 12 + 8978639 - 8978713 1 75

TTG ...

LTT ...

24622 12 + 3235824 - 3235892 1 69

CTG ...

LGF ...

24624 12 - 91841588 - 91841761 1 174

GTG ...

VES ...

24626 12 + 17279681 - 17279740 1 60

TTG ...

LFS ...

24628 12 + 77277374 - 77277445 1 72

CTG ...

LRP ...

24630 12 + 9004074 - 9004154 1 81

GTG ...

VAK ...

24632 12 + 100199659 - 100199766 1 108

CTG ...

LRW ...

24634 12 + 76914682 - 76914735 1 54

CTG ...

LMC ...

24637 12 + 17277270 - 17277308 1 39

GTG ...

VGG ...

24639 12 + 70960010 - 70960054 1 45

CTG ...

LQK ...

24641 12 - 84940319 - 84940369 1 51

CTG ...

LHI ...

24644 1 + 172148108 - 172148302 1 195

GTG ...

VTA ...

24647 12 - 65069947 - 65070012 1 66

TTG ...

LPR ...

24649 1 + 75144983 - 75145120 1 138

CTG ...

LVV ...

24651 12 + 111039379 - 111039432 1 54

GTG ...

VRA ...

24654 12 + 8996072 - 8996179 1 108

GTG ...

VLV ...

24656 12 - 54861151 - 54861213 1 63

ATG ...

MAW ...

24658 12 + 9008525 - 9008713 1 189

TTG ...

LDT ...

24660 12 + 111539413 - 111539679 1 267

TTG ...

LRS ...

24662 12 + 110640637 - 110640792 1 156

CTG ...

LAE ...

24665 12 + 17280590 - 17280643 1 54

TTG ...

LEV ...

24667 1 + 6244828 - 6244983 1 156

TTG ...

LKD ...

24670 12 + 30588497 - 30588577 1 81

TTG ...

LTP ...

24672 12 + 69184378 - 69184416 1 39

ATG ...

MER ...

24675 12 - 91569793 - 91569834 1 42

CTG ...

LLL ...

24677 12 - 84765273 - 84765344 1 72

ATG ...

MSH ...

24679 12 + 105827025 - 105827090 1 66

GTG ...

VPS ...

24681 12 + 85221533 - 85221676 1 144

GTG ...

VIM ...

24684 12 + 9008573 - 9008713 1 141

TTG ...

LLK ...

24686 1 - 16103164 - 16103193 1 30

CTG ...

LAF ...

24688 1 + 86064755 - 86064793 1 39

GTG ...

VDE ...

24690 12 - 84940319 - 84940384 1 66

ATG ...

MDS ...

24692 1 + 85894606 - 85894710 1 105

TTG ...

LRS ...

24694 12 + 30585523 - 30585561 1 39

GTG ...

VPP ...

24696 12 + 17277187 - 17277381 1 195

TTG ...

LSH ...

24698 12 + 3235845 - 3235892 1 48

ATG ...

MSA ...

24700 12 - 102742230 - 102742448 1 219

CTG ...

LVQ ...

24702 12 - 91809844 - 91809972 1 129

CTG ...

LLL ...

24704 12 + 8982799 - 8982906 1 108

CTG ...

LCH ...

24706 12 - 3253325 - 3253357 1 33

ATG ...

MPM ...

24708 12 - 91809844 - 91810014 1 171

TTG ...

LGP ...

24710 12 + 76773312 - 76773401 1 90

GTG ...

VCS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5