Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

24482 12 + 32967658 - 32967741 1 84

TTG ...

LCS ...

24484 12 - 84760748 - 84760789 1 42

CTG ...

LPH ...

24486 12 - 79176209 - 79176247 1 39

TTG ...

LPV ...

24489 12 + 17270401 - 17270550 1 150

GTG ...

VSC ...

24491 12 + 8935988 - 8936086 1 99

CTG ...

LIS ...

24494 12 + 111997798 - 111997992 1 195

GTG ...

VVL ...

24496 12 + 111539431 - 111539679 1 249

CTG ...

LYW ...

24499 12 - 3309476 - 3309694 1 219

TTG ...

LSR ...

24501 12 + 104101848 - 104101886 1 39

CTG ...

LNP ...

24503 1 - 135116515 - 135116658 1 144

TTG ...

LPS ...

24505 12 + 70456065 - 70456094 1 30

TTG ...

LPS ...

24507 1 - 135430260 - 135430334 1 75

CTG ...

LSP ...

24509 1 + 82883259 - 82883297 1 39

GTG ...

VHL ...

24512 12 + 112026264 - 112026308 1 45

TTG ...

LQT ...

24514 12 + 32967585 - 32967797 1 213

GTG ...

VNW ...

24516 1 + 34443629 - 34443709 1 81

GTG ...

VRA ...

24518 12 + 28751890 - 28751940 1 51

ATG ...

MGS ...

24521 12 + 85826489 - 85826527 1 39

CTG ...

LQG ...

24523 12 + 80644227 - 80644358 1 132

ATG ...

MKR ...

24526 12 + 9021748 - 9021897 1 150

GTG ...

VRV ...

24528 12 + 69303543 - 69303692 1 150

CTG ...

LDS ...

24531 12 + 113074893 - 113074934 1 42

TTG ...

LSK ...

24534 12 - 86723361 - 86723396 1 36

ATG ...

MPF ...

24536 12 + 3960065 - 3960190 1 126

GTG ...

VRR ...

24538 12 + 30584486 - 30584557 1 72

CTG ...

LLG ...

24540 12 - 75716538 - 75716570 1 33

ATG ...

MRR ...

24543 1 - 191309915 - 191309965 1 51

GTG ...

VWP ...

24546 12 - 91814960 - 91815127 1 168

GTG ...

VCE ...

24548 12 + 113144104 - 113144193 1 90

GTG ...

VRT ...

24551 12 + 70456029 - 70456094 1 66

CTG ...

LLV ...

24553 12 + 80490843 - 80490893 1 51

GTG ...

VTA ...

24556 12 - 69198068 - 69198328 1 261

CTG ...

LIL ...

24558 12 + 70958040 - 70958093 1 54

TTG ...

LWK ...

24560 12 + 3235863 - 3235892 1 30

GTG ...

VSD ...

24563 12 - 14151793 - 14152032 1 240

TTG ...

LPG ...

24565 12 + 30588524 - 30588577 1 54

TTG ...

LCS ...

24568 1 + 153447855 - 153447998 1 144

GTG ...

VVE ...

24570 12 - 3309476 - 3309514 1 39

CTG ...

LRP ...

24572 12 + 69305816 - 69305845 1 30

CTG ...

LDT ...

24574 12 - 84765273 - 84765329 1 57

CTG ...

LSA ...

24576 12 + 86952895 - 86952936 1 42

GTG ...

VAA ...

24579 1 + 79776265 - 79776315 1 51

CTG ...

LER ...

24581 12 - 55492415 - 55492474 1 60

ATG ...

MAS ...

24583 12 + 85826471 - 85826527 1 57

TTG ...

LFD ...

24585 1 - 67004813 - 67004872 1 60

ATG ...

MVL ...

24587 12 + 112042842 - 112042952 1 111

GTG ...

VDV ...

24589 12 - 84757095 - 84757181 1 87

ATG ...

MTK ...

24591 12 - 101064980 - 101065018 1 39

CTG ...

LDA ...

24594 1 + 191596956 - 191597024 1 69

CTG ...

LKL ...

24596 1 - 36443470 - 36443607 1 138

GTG ...

VGT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5