Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

24349 12 + 104101791 - 104101886 1 96

CTG ...

LWD ...

24352 12 - 14150346 - 14150384 1 39

CTG ...

LRC ...

24355 12 + 30584498 - 30584557 1 60

CTG ...

LAR ...

24358 12 - 91841588 - 91841848 1 261

TTG ...

LPT ...

24361 1 - 43141659 - 43141787 1 129

CTG ...

LPR ...

24364 12 - 72664665 - 72664706 1 42

TTG ...

LCS ...

24368 12 + 64965964 - 64966077 1 114

CTG ...

LTT ...

24371 12 - 54861782 - 54861814 1 33

ATG ...

MMK ...

24374 12 + 8982771 - 8982827 1 57

TTG ...

LGE ...

24376 12 - 102742230 - 102742346 1 117

CTG ...

LPE ...

24380 12 - 85272617 - 85272685 1 69

TTG ...

LTE ...

24383 12 - 14150186 - 14150338 1 153

GTG ...

VAT ...

24385 1 - 55000238 - 55000309 1 72

ATG ...

MVL ...

24387 12 - 69196974 - 69197108 1 135

CTG ...

LQM ...

24390 12 + 105808603 - 105808674 1 72

TTG ...

LDL ...

24393 12 + 111997894 - 111997992 1 99

GTG ...

VEG ...

24396 12 + 108179827 - 108179859 1 33

ATG ...

MAA ...

24399 12 - 102423626 - 102423712 1 87

CTG ...

LCF ...

24402 12 + 112026255 - 112026308 1 54

CTG ...

LAG ...

24405 12 + 9008050 - 9008115 1 66

CTG ...

LIQ ...

24408 12 - 86723361 - 86723420 1 60

ATG ...

MLS ...

24411 1 + 45813243 - 45813317 1 75

TTG ...

LNG ...

24414 12 + 4817716 - 4817823 1 108

GTG ...

VSP ...

24417 12 + 112007558 - 112007599 1 42

GTG ...

VLV ...

24419 12 + 85826483 - 85826527 1 45

GTG ...

VRL ...

24423 12 + 70456021 - 70456089 1 69

CTG ...

LVS ...

24425 12 + 100199539 - 100199589 1 51

CTG ...

LGV ...

24427 1 + 125585124 - 125585237 1 114

CTG ...

LHY ...

24429 12 + 55414388 - 55414441 1 54

TTG ...

LVF ...

24433 12 + 8743766 - 8744032 1 267

CTG ...

LTN ...

24436 12 + 9024230 - 9024364 1 135

CTG ...

LRV ...

24439 12 + 70460507 - 70460584 1 78

TTG ...

LEY ...

24441 12 + 112032754 - 112032813 1 60

CTG ...

LAG ...

24443 12 + 108555008 - 108555058 1 51

CTG ...

LSV ...

24446 12 + 4826790 - 4826900 1 111

ATG ...

MWS ...

24448 12 - 58971228 - 58971257 1 30

TTG ...

LIY ...

24451 12 + 80945523 - 80945555 1 33

CTG ...

LLS ...

24454 12 + 8989971 - 8990135 1 165

GTG ...

VFW ...

24456 12 + 17270398 - 17270550 1 153

CTG ...

LVS ...

24458 12 + 105808624 - 105808674 1 51

CTG ...

LLK ...

24460 12 + 9008510 - 9008713 1 204

TTG ...

LTF ...

24462 12 + 112034582 - 112034686 1 105

CTG ...

LKH ...

24464 12 + 70453146 - 70453313 1 168

CTG ...

LRL ...

24466 12 + 17270509 - 17270550 1 42

CTG ...

LWL ...

24468 12 + 111996787 - 111996879 1 93

GTG ...

VHE ...

24470 12 + 17280964 - 17281014 1 51

TTG ...

LEG ...

24472 12 - 86723354 - 86723407 1 54

ATG ...

MSK ...

24474 12 + 4826814 - 4826900 1 87

ATG ...

MLR ...

24478 12 - 14150186 - 14150296 1 111

CTG ...

LGR ...

24480 12 + 17277237 - 17277308 1 72

GTG ...

VPC ...

Previous 212 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5