Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

24202 11 + 120494972 - 120495491 3 198

CTG ...

LTR ...

24204 11 - 106164039 - 106164454 2 177

CTG ...

LNH ...

24206 11 - 100703070 - 100703539 2 246

TTG ...

LAL ...

24209 11 - 101100190 - 101101018 2 114

CTG ...

LWD ...

24211 11 - 84911467 - 84913243 2 204

CTG ...

LQN ...

24213 11 + 48803405 - 48803885 2 123

ATG ...

MRV ...

24215 11 + 78058969 - 78059233 2 165

CTG ...

LTK ...

24217 11 + 58918142 - 58918942 3 126

CTG ...

LTL ...

24220 11 - 103679236 - 103683827 2 198

CTG ...

LEG ...

24222 11 - 120595307 - 120595937 2 30

ATG ...

MVS ...

24224 11 - 69919317 - 69920488 3 168

TTG ...

LDF ...

24226 11 - 6108355 - 6113289 2 48

TTG ...

LTT ...

24229 11 - 34091598 - 34096845 2 144

ATG ...

MFK ...

24231 11 + 86484721 - 86486128 3 147

TTG ...

LAR ...

24233 11 - 116245703 - 116246285 3 294

GTG ...

VEF ...

24236 11 - 50200790 - 50202435 3 195

CTG ...

LKE ...

24238 11 + 23261931 - 23267904 2 279

GTG ...

VVN ...

24240 1 - 135301918 - 135301959 1 42

TTG ...

LPS ...

24243 11 - 116083809 - 116086937 2 210

GTG ...

VGE ...

24246 11 - 78507710 - 78508725 4 282

TTG ...

LFV ...

24248 11 - 21322022 - 21323345 2 255

GTG ...

VCH ...

24250 11 - 101098615 - 101102048 4 270

TTG ...

LGR ...

24252 11 + 120494534 - 120495491 4 273

GTG ...

VVR ...

24254 11 - 99022332 - 99022899 2 159

CTG ...

LEH ...

24256 11 - 120711292 - 120711841 4 243

TTG ...

LGH ...

24258 11 - 59785196 - 59787407 2 216

CTG ...

LSR ...

24260 1 + 156051545 - 156051595 1 51

CTG ...

LDR ...

24262 11 + 109661090 - 109662302 3 126

ATG ...

MCC ...

24265 1 + 172082838 - 172082891 1 54

GTG ...

VEA ...

24290 12 - 91569793 - 91569831 1 39

CTG ...

LLQ ...

24293 1 + 191596268 - 191596408 1 141

CTG ...

LQQ ...

24295 12 + 32975699 - 32975728 1 30

GTG ...

VAH ...

24298 12 + 70453233 - 70453313 1 81

CTG ...

LGP ...

24301 1 + 191822535 - 191822819 1 285

TTG ...

LTL ...

24303 12 - 91830648 - 91830791 1 144

GTG ...

VSY ...

24306 1 - 36807843 - 36808130 1 288

CTG ...

LEQ ...

24309 12 + 17279663 - 17279740 1 78

GTG ...

VSR ...

24312 12 + 8982741 - 8982827 1 87

CTG ...

LAL ...

24315 12 + 3960044 - 3960190 1 147

CTG ...

LAA ...

24318 12 + 70952982 - 70953026 1 45

CTG ...

LLT ...

24321 12 + 111758941 - 111758976 1 36

CTG ...

LRG ...

24324 12 - 78849704 - 78849784 1 81

GTG ...

VLP ...

24326 12 + 9008633 - 9008713 1 81

TTG ...

LFA ...

24328 12 - 21333950 - 21334051 1 102

GTG ...

VDE ...

24331 1 - 16103164 - 16103211 1 48

GTG ...

VPA ...

24334 12 - 3309490 - 3309564 1 75

CTG ...

LLR ...

24336 12 + 77277398 - 77277445 1 48

GTG ...

VFS ...

24339 12 - 91814960 - 91815139 1 180

TTG ...

LFK ...

24342 1 + 191596899 - 191597024 1 126

CTG ...

LQY ...

24346 12 + 59013504 - 59013617 1 114

GTG ...

VEE ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5