Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

24092 11 + 50384682 - 50385895 2 174

CTG ...

LSG ...

24095 11 + 26387236 - 26422458 2 126

CTG ...

LLR ...

24097 11 - 55399296 - 55405232 3 204

GTG ...

VCA ...

24099 11 + 107549372 - 107555527 2 39

ATG ...

MNY ...

24102 11 - 116080321 - 116080671 2 150

GTG ...

VKS ...

24104 11 + 59204672 - 59205658 2 96

ATG ...

MLA ...

24106 1 - 178337552 - 178337743 1 192

TTG ...

LPR ...

24108 11 + 43433805 - 43437389 3 60

CTG ...

LRR ...

24110 11 - 120594853 - 120595168 3 204

CTG ...

LFF ...

24112 11 + 3514975 - 3516275 2 114

CTG ...

LLL ...

24114 11 - 59785196 - 59787274 2 87

CTG ...

LTA ...

24116 11 - 60232957 - 60241852 2 36

CTG ...

LHL ...

24119 11 - 106164039 - 106164499 3 222

ATG ...

MGL ...

24121 11 - 55398693 - 55399295 2 108

CTG ...

LNS ...

24123 11 - 115609075 - 115609613 3 162

GTG ...

VIV ...

24125 11 - 59807915 - 59809775 2 117

GTG ...

VAT ...

24127 1 + 105743235 - 105743357 1 123

TTG ...

LAS ...

24130 11 - 54756425 - 54787634 2 210

GTG ...

VEI ...

24133 11 + 52118096 - 52118705 2 102

ATG ...

MFG ...

24135 11 + 55485668 - 55487148 2 102

CTG ...

LLV ...

24137 11 - 120108909 - 120110162 3 237

CTG ...

LKA ...

24139 1 + 172118856 - 172118981 1 126

GTG ...

VGV ...

24141 11 - 100710441 - 100710819 2 294

CTG ...

LLC ...

24143 11 - 102306641 - 102307020 3 291

ATG ...

MRL ...

24145 11 + 86484793 - 86486128 3 75

ATG ...

MRG ...

24147 11 - 116485865 - 116490169 3 246

CTG ...

LRV ...

24149 11 - 86585308 - 86602033 3 273

GTG ...

VEQ ...

24151 11 - 6274169 - 6274521 3 189

GTG ...

VTV ...

24153 11 + 101552941 - 101554014 2 42

GTG ...

VGG ...

24155 11 + 69940371 - 69940759 2 231

GTG ...

VIN ...

24157 11 - 115609247 - 115609613 2 264

GTG ...

VIV ...

24159 11 - 97181738 - 97184958 2 120

ATG ...

MLM ...

24161 1 - 88266500 - 88266541 1 42

GTG ...

VMA ...

24164 11 + 4205773 - 4212835 3 243

CTG ...

LEV ...

24166 11 + 102190082 - 102190266 2 69

CTG ...

LGI ...

24168 11 - 69601248 - 69601560 2 201

CTG ...

LMY ...

24170 11 + 52118141 - 52118705 2 57

CTG ...

LPW ...

24173 11 - 85216452 - 85234751 2 153

CTG ...

LSW ...

24175 11 - 120964978 - 120969062 3 213

GTG ...

VAP ...

24177 11 - 120562513 - 120562714 2 93

TTG ...

LGR ...

24179 11 - 106265935 - 106266953 3 285

CTG ...

LDQ ...

24181 11 - 101974734 - 101984684 3 279

ATG ...

MAA ...

24184 11 - 120543946 - 120544731 2 111

GTG ...

VRF ...

24186 11 - 93860813 - 93862107 3 174

CTG ...

LQV ...

24189 1 + 191596908 - 191597024 1 117

TTG ...

LKN ...

24191 11 - 3417990 - 3425350 4 285

TTG ...

LFL ...

24193 11 - 86724289 - 86726275 3 261

GTG ...

VAA ...

24195 1 + 156051563 - 156051595 1 33

CTG ...

LAW ...

24197 11 - 120543684 - 120543934 2 96

GTG ...

VEK ...

24200 11 - 120543946 - 120544701 2 81

ATG ...

MCA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5