Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

23982 11 + 120494555 - 120495491 4 252

CTG ...

LAL ...

23984 1 - 135111298 - 135111438 1 141

GTG ...

VKQ ...

23986 1 - 93635294 - 93635383 1 90

GTG ...

VLE ...

23989 11 + 54353045 - 54361197 2 156

CTG ...

LHS ...

23991 1 + 75210974 - 75211039 1 66

CTG ...

LRR ...

23994 11 - 6624263 - 6626031 3 153

CTG ...

LME ...

23996 11 - 102306641 - 102307023 3 294

CTG ...

LMR ...

23998 11 + 54352994 - 54361197 2 207

TTG ...

LKK ...

24000 11 - 104425027 - 104426447 3 291

ATG ...

MKK ...

24003 11 - 116485865 - 116490187 3 264

CTG ...

LSA ...

24005 11 + 55485710 - 55487148 2 60

CTG ...

LNQ ...

24007 11 - 100436206 - 100440879 3 156

GTG ...

VQE ...

24009 11 + 3514972 - 3516275 2 117

CTG ...

LLL ...

24011 11 - 6429213 - 6439467 3 105

TTG ...

LFY ...

24013 11 - 6273815 - 6274232 2 198

TTG ...

LYC ...

24015 11 - 32232951 - 32233947 2 210

GTG ...

VPA ...

24017 11 + 101284877 - 101286367 3 198

CTG ...

LPT ...

24019 11 + 80383336 - 80386012 3 270

CTG ...

LRD ...

24021 11 - 101098615 - 101102057 4 279

TTG ...

LAM ...

24023 11 + 69997813 - 69998535 3 261

CTG ...

LVT ...

24025 11 - 96777030 - 96777503 2 81

GTG ...

VRC ...

24027 1 + 105753594 - 105753623 1 30

CTG ...

LAN ...

24030 11 + 59204627 - 59205658 2 141

CTG ...

LTA ...

24032 11 - 120711292 - 120711422 2 48

GTG ...

VDQ ...

24034 11 - 104425027 - 104467650 3 279

ATG ...

MPL ...

24036 11 - 50296320 - 50297098 2 57

CTG ...

LAV ...

24038 11 - 21558467 - 21559286 2 180

CTG ...

LLS ...

24040 11 - 115269870 - 115271327 3 201

CTG ...

LGQ ...

24042 11 - 120711292 - 120711413 2 39

CTG ...

LEK ...

24045 11 - 102154509 - 102155792 2 264

CTG ...

LQL ...

24047 11 + 72663135 - 72672962 2 42

TTG ...

LGS ...

24050 11 - 98438062 - 98438350 3 198

TTG ...

LFL ...

24052 11 - 6274421 - 6274772 2 177

CTG ...

LCV ...

24054 11 - 116079543 - 116079920 3 267

ATG ...

MVT ...

24056 11 - 116080321 - 116081264 3 192

TTG ...

LGR ...

24058 11 - 69741805 - 69742465 2 300

CTG ...

LRY ...

24061 11 + 106237043 - 106238618 2 192

GTG ...

VAV ...

24063 11 - 97181738 - 97184952 2 114

ATG ...

MLD ...

24065 11 - 55395858 - 55398578 2 123

TTG ...

LAS ...

24067 11 - 84911851 - 84916308 5 285

GTG ...

VVC ...

24069 11 - 69919317 - 69920506 3 186

TTG ...

LGF ...

24071 11 + 4905702 - 4911563 3 222

GTG ...

VKR ...

24074 11 - 101100190 - 101102081 3 231

CTG ...

LSC ...

24076 11 + 26387206 - 26422458 2 156

CTG ...

LCA ...

24078 11 + 51763740 - 51777494 2 60

TTG ...

LER ...

24080 11 - 5062151 - 5062508 2 270

CTG ...

LRS ...

24083 11 - 21558467 - 21559256 2 150

GTG ...

VQC ...

24085 1 - 162724745 - 162724831 1 87

ATG ...

MSF ...

24087 11 + 23261934 - 23267904 2 276

GTG ...

VNC ...

24090 11 + 120494528 - 120495491 4 279

CTG ...

LQV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5