Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

23870 11 + 32205527 - 32206969 3 147

CTG ...

LRI ...

23872 1 + 150412897 - 150413121 1 225

GTG ...

VLL ...

23874 11 - 53267052 - 53269776 3 252

GTG ...

VCP ...

23876 11 + 120598588 - 120599263 3 39

GTG ...

VIR ...

23878 1 + 172091179 - 172091244 1 66

CTG ...

LSA ...

23880 11 - 6429213 - 6433770 2 60

CTG ...

LLL ...

23882 11 + 30865470 - 30866053 2 138

GTG ...

VLT ...

23885 11 - 98993804 - 98994335 2 261

TTG ...

LSA ...

23888 11 - 97175757 - 97177280 2 129

ATG ...

MRK ...

23890 11 - 100422928 - 100431289 3 231

GTG ...

VMV ...

23892 11 - 50200930 - 50202605 3 111

TTG ...

LYS ...

23895 11 - 6108245 - 6113272 2 141

CTG ...

LQG ...

23897 11 - 5062151 - 5062511 2 273

GTG ...

VLR ...

23899 1 + 191596277 - 191596408 1 132

CTG ...

LVT ...

23901 11 - 84913285 - 84914225 2 33

CTG ...

LRR ...

23904 11 - 106187175 - 106202145 2 141

GTG ...

VEE ...

23906 1 - 156432839 - 156432868 1 30

GTG ...

VLF ...

23908 11 + 78251144 - 78254857 2 72

CTG ...

LTH ...

23910 11 - 21322022 - 21323309 2 219

TTG ...

LKV ...

23913 1 - 128413656 - 128413697 1 42

TTG ...

LGP ...

23915 11 - 50311722 - 50325528 3 99

GTG ...

VRE ...

23917 11 + 119913935 - 119915526 2 117

CTG ...

LQL ...

23919 11 - 69602634 - 69603013 2 279

TTG ...

LEP ...

23922 11 - 6429213 - 6433788 2 78

ATG ...

MDG ...

23924 1 + 172101426 - 172101518 1 93

GTG ...

VSC ...

23927 11 + 75646795 - 75647345 2 282

CTG ...

LMS ...

23929 11 + 101284898 - 101286367 3 177

GTG ...

VEM ...

23931 11 - 68829911 - 68833482 3 285

CTG ...

LLM ...

23933 11 - 116080321 - 116080650 2 129

ATG ...

MGT ...

23935 11 - 69602822 - 69603090 2 168

CTG ...

LRT ...

23937 1 - 172071236 - 172071328 1 93

GTG ...

VAL ...

23939 11 + 5099862 - 5100425 2 66

TTG ...

LPS ...

23941 11 - 69919317 - 69920836 3 150

GTG ...

VRL ...

23945 11 - 120108909 - 120110168 3 243

GTG ...

VEL ...

23947 11 - 120711292 - 120711428 2 54

GTG ...

VEV ...

23949 11 - 116080321 - 116080659 2 138

ATG ...

MEP ...

23951 11 + 30865554 - 30866053 2 54

CTG ...

LII ...

23953 11 - 75312139 - 75312418 2 135

GTG ...

VMA ...

23955 11 - 59785196 - 59787322 2 135

GTG ...

VQC ...

23957 11 - 102403420 - 102403780 3 264

CTG ...

LVR ...

23959 11 + 115568364 - 115569809 3 222

TTG ...

LVR ...

23961 11 - 116082268 - 116083895 2 201

GTG ...

VPE ...

23963 11 - 100589745 - 100590958 3 198

TTG ...

LGI ...

23965 11 - 58934198 - 58937174 2 69

ATG ...

MVR ...

23968 1 - 10034824 - 10035078 1 255

GTG ...

VMG ...

23970 11 - 61168353 - 61174866 2 192

CTG ...

LRS ...

23972 11 - 100590982 - 100591566 3 225

GTG ...

VTF ...

23974 11 + 103028623 - 103046382 2 84

CTG ...

LMM ...

23977 11 - 75312139 - 75312722 3 195

GTG ...

VVT ...

23979 1 - 162724696 - 162724752 1 57

TTG ...

LFN ...

Previous 208 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5