Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

23765 11 - 60789144 - 60789671 2 249

CTG ...

LGT ...

23767 11 + 75755614 - 75756818 2 69

ATG ...

MYW ...

23770 11 + 86484787 - 86486128 3 81

CTG ...

LVM ...

23772 1 - 143702549 - 143702767 1 219

GTG ...

VAA ...

23774 11 - 62533887 - 62536324 2 111

TTG ...

LKF ...

23776 11 - 120594853 - 120595346 4 282

GTG ...

VRL ...

23778 11 - 106784511 - 106784940 2 75

GTG ...

VQT ...

23780 11 + 55485731 - 55487148 2 39

TTG ...

LHR ...

23782 11 - 101098615 - 101102066 4 288

CTG ...

LTF ...

23785 11 + 120495053 - 120495491 3 117

GTG ...

VLL ...

23787 11 - 4482768 - 4485427 2 237

CTG ...

LAA ...

23789 11 - 50308915 - 50310464 3 108

ATG ...

MYF ...

23791 11 - 121117642 - 121117846 2 75

CTG ...

LST ...

23793 11 - 21565884 - 21566684 2 102

CTG ...

LVK ...

23795 11 + 4905666 - 4911563 3 258

CTG ...

LSN ...

23797 11 - 100583553 - 100584238 2 132

TTG ...

LDE ...

23799 11 - 103679236 - 103683818 2 189

CTG ...

LRA ...

23801 11 - 70235460 - 70235798 4 108

GTG ...

VTL ...

23803 1 - 178332143 - 178332229 1 87

GTG ...

VQL ...

23805 11 + 93912441 - 93918854 2 42

GTG ...

VAC ...

23808 11 - 59785196 - 59787287 2 96

GTG ...

VRV ...

23810 1 - 161876578 - 161876673 1 96

ATG ...

MGR ...

23812 11 + 120099061 - 120099202 2 60

CTG ...

LRP ...

23814 11 - 106187175 - 106202124 2 120

CTG ...

LTH ...

23816 11 + 23002361 - 23002883 2 108

ATG ...

MPK ...

23818 11 - 98438062 - 98438398 3 246

TTG ...

LLG ...

23820 11 - 59785196 - 59787329 2 138

CTG ...

LGR ...

23822 11 - 3438308 - 3452300 2 108

CTG ...

LTD ...

23824 11 - 116024016 - 116024446 2 72

TTG ...

LRL ...

23827 11 - 96828174 - 96829438 2 78

ATG ...

MAA ...

23829 11 + 3515053 - 3516275 2 36

CTG ...

LAR ...

23831 11 - 70235404 - 70236192 2 234

GTG ...

VKR ...

23833 11 + 62883634 - 62885177 2 240

GTG ...

VAS ...

23835 11 + 80383363 - 80386012 3 243

GTG ...

VEN ...

23837 11 + 48804214 - 48805569 2 108

GTG ...

VGT ...

23839 1 - 44099894 - 44100016 1 123

TTG ...

LCL ...

23842 11 - 59836887 - 59839751 2 216

TTG ...

LLG ...

23844 11 - 84422956 - 84445739 4 249

GTG ...

VMH ...

23846 11 - 61158396 - 61159244 2 63

ATG ...

MHP ...

23848 11 - 84422956 - 84445727 4 237

ATG ...

MVC ...

23850 11 - 5062151 - 5062484 2 246

GTG ...

VGG ...

23852 11 + 49846904 - 49854251 2 111

CTG ...

LGA ...

23854 1 + 134628658 - 134628756 1 99

CTG ...

LKF ...

23856 11 - 62525163 - 62527639 3 273

ATG ...

MIN ...

23858 11 - 6108245 - 6113389 2 258

CTG ...

LEG ...

23860 11 + 93886396 - 93887039 2 39

ATG ...

MEN ...

23862 11 - 101100190 - 101100982 2 78

CTG ...

LQR ...

23864 11 - 34091598 - 34096809 2 108

GTG ...

VEA ...

23866 11 - 77509261 - 77509647 2 63

ATG ...

MWL ...

23868 1 - 55016692 - 55016853 1 162

TTG ...

LLG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5