Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

23657 11 - 34091598 - 34096773 2 72

TTG ...

LEV ...

23659 11 - 55395858 - 55398623 2 168

TTG ...

LRR ...

23661 11 - 113729658 - 113751775 2 96

ATG ...

MGR ...

23663 11 - 85191864 - 85194577 2 39

TTG ...

LGR ...

23665 1 - 135125220 - 135125330 1 111

CTG ...

LSP ...

23667 1 - 84730502 - 84730657 1 156

CTG ...

LRQ ...

23669 11 + 52245060 - 52246042 3 120

CTG ...

LRR ...

23671 1 + 59700886 - 59700969 1 84

CTG ...

LSR ...

23674 11 + 4205758 - 4212835 3 258

CTG ...

LEE ...

23676 11 - 102154509 - 102155804 2 276

TTG ...

LGA ...

23678 11 + 70525413 - 70525927 2 126

CTG ...

LFV ...

23680 11 + 109651048 - 109653878 3 126

CTG ...

LLV ...

23683 11 - 69980027 - 69980432 4 252

CTG ...

LCT ...

23685 11 - 69602822 - 69603060 2 138

GTG ...

VTL ...

23688 1 + 45335714 - 45335785 1 72

TTG ...

LLI ...

23690 11 - 100710441 - 100710795 2 270

CTG ...

LET ...

23692 11 - 116082268 - 116083925 2 231

GTG ...

VEL ...

23694 11 - 115268324 - 115268593 2 147

CTG ...

LLS ...

23696 11 + 101284889 - 101286367 3 186

CTG ...

LAY ...

23698 11 + 4905687 - 4911563 3 237

CTG ...

LKE ...

23701 11 - 61159344 - 61162852 4 300

GTG ...

VRC ...

23703 11 - 69919317 - 69921177 3 129

GTG ...

VRS ...

23705 11 - 116485865 - 116490202 3 279

CTG ...

LLL ...

23707 11 + 119268173 - 119270136 3 99

CTG ...

LSA ...

23709 11 - 106187175 - 106202130 2 126

CTG ...

LKL ...

23711 11 + 55485707 - 55487148 2 63

CTG ...

LLN ...

23713 11 - 97167625 - 97169227 3 222

GTG ...

VPR ...

23715 11 - 51606584 - 51606705 2 42

CTG ...

LRR ...

23717 11 - 99022332 - 99022887 2 147

CTG ...

LLR ...

23719 11 - 58319951 - 58322721 2 126

ATG ...

MVS ...

23722 11 - 115269870 - 115271351 3 225

CTG ...

LSC ...

23724 1 - 106780500 - 106780532 1 33

GTG ...

VSK ...

23727 11 - 115268725 - 115269807 2 135

CTG ...

LAS ...

23729 11 + 69324162 - 69324407 2 108

CTG ...

LST ...

23731 1 + 45337242 - 45337343 1 102

GTG ...

VIL ...

23734 11 - 120561248 - 120562192 2 45

GTG ...

VVA ...

23736 11 + 69395828 - 69396155 2 153

CTG ...

LTR ...

23738 11 + 106046710 - 106047673 2 177

ATG ...

MRR ...

23740 11 - 98438062 - 98438365 3 213

CTG ...

LNF ...

23742 11 - 50308915 - 50310398 2 42

CTG ...

LMM ...

23744 11 - 120411663 - 120413648 2 171

TTG ...

LGT ...

23746 11 - 120382469 - 120383384 2 246

CTG ...

LLE ...

23748 11 - 17211137 - 17211425 2 114

CTG ...

LSS ...

23751 11 + 115583422 - 115583822 2 108

CTG ...

LQD ...

23753 11 + 62602941 - 62603235 2 84

CTG ...

LVT ...

23755 11 - 69741805 - 69742444 2 279

CTG ...

LAG ...

23757 11 - 6274421 - 6274859 3 264

GTG ...

VRM ...

23759 11 - 75312139 - 75312719 3 192

GTG ...

VTT ...

23761 11 - 50308915 - 50310395 2 39

ATG ...

MMK ...

23763 1 - 118300932 - 118301009 1 78

CTG ...

LET ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5