Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

23543 11 - 54756425 - 54787589 2 165

CTG ...

LEQ ...

23546 11 - 86700941 - 86702364 2 297

TTG ...

LQE ...

23549 11 + 78251051 - 78254857 2 165

GTG ...

VDD ...

23551 11 + 86484697 - 86486128 3 171

CTG ...

LVA ...

23554 1 + 57406968 - 57407240 1 273

TTG ...

LRS ...

23557 11 + 107489047 - 107491841 2 87

CTG ...

LPP ...

23559 1 - 156432839 - 156432895 1 57

CTG ...

LSY ...

23562 11 - 59830305 - 59833140 3 162

GTG ...

VKF ...

23565 11 - 98170433 - 98171766 3 153

CTG ...

LKT ...

23567 11 - 50296320 - 50297336 3 159

ATG ...

MKK ...

23570 11 - 115609425 - 115609662 3 135

CTG ...

LSL ...

23572 11 - 17203934 - 17208931 4 282

CTG ...

LMA ...

23574 11 - 115609247 - 115609637 2 288

GTG ...

VDL ...

23576 11 - 75312139 - 75312743 3 216

TTG ...

LMD ...

23578 11 - 103687631 - 103689326 3 75

TTG ...

LIG ...

23581 11 - 106187175 - 106202115 2 111

GTG ...

VQR ...

23583 1 + 93507024 - 93507086 1 63

GTG ...

VVT ...

23586 11 - 120543684 - 120543982 2 144

CTG ...

LRS ...

23588 11 - 5062151 - 5062463 2 225

CTG ...

LEH ...

23590 11 + 109661108 - 109662302 3 108

TTG ...

LMI ...

23592 11 - 69919317 - 69920476 3 156

GTG ...

VRE ...

23594 11 - 69919317 - 69920428 2 108

TTG ...

LQA ...

23596 11 - 93955506 - 93960707 2 159

CTG ...

LGP ...

23598 11 + 120494507 - 120495491 4 300

CTG ...

LRM ...

23600 11 + 5099892 - 5100425 2 36

CTG ...

LQG ...

23602 11 + 78059080 - 78059233 2 54

GTG ...

VDL ...

23604 11 - 100439905 - 100440254 3 147

GTG ...

VIS ...

23607 11 - 50301810 - 50304344 2 81

CTG ...

LSS ...

23609 11 + 78059050 - 78059233 2 84

CTG ...

LPA ...

23611 1 + 134624862 - 134624975 1 114

GTG ...

VNS ...

23613 11 - 70235404 - 70237288 3 282

CTG ...

LPH ...

23615 11 + 101284829 - 101286367 3 246

CTG ...

LES ...

23617 11 - 59785196 - 59787298 2 111

GTG ...

VGC ...

23620 11 - 102403420 - 102403747 3 231

CTG ...

LSP ...

23622 11 - 50296320 - 50297300 3 123

ATG ...

MKR ...

23624 11 - 3165307 - 3170666 3 198

TTG ...

LIY ...

23626 11 - 50301810 - 50304332 2 69

ATG ...

MTG ...

23628 11 - 104425027 - 104441727 3 270

GTG ...

VCV ...

23631 11 - 69603482 - 69605332 2 144

TTG ...

LRS ...

23633 11 - 59785196 - 59787311 2 120

CTG ...

LLH ...

23635 11 + 69939296 - 69939919 2 78

CTG ...

LWS ...

23637 11 + 50131466 - 50131869 2 99

GTG ...

VAN ...

23639 11 - 120711292 - 120711437 2 63

CTG ...

LDV ...

23641 11 + 78263630 - 78264045 2 144

ATG ...

MIC ...

23643 11 - 106164039 - 106164457 2 180

CTG ...

LLN ...

23647 11 - 6274421 - 6274763 2 168

CTG ...

LRV ...

23649 11 - 6271776 - 6273784 2 69

TTG ...

LTR ...

23651 11 + 5099883 - 5100425 2 45

CTG ...

LAS ...

23653 11 + 109660123 - 109661071 2 84

GTG ...

VLK ...

23655 11 + 69588505 - 69588771 2 189

GTG ...

VRR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5