Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

23435 11 - 61159344 - 61160596 2 45

CTG ...

LML ...

23437 11 - 84911851 - 84916299 5 276

TTG ...

LEK ...

23440 11 + 94940570 - 94940760 2 72

CTG ...

LVS ...

23442 1 - 178333889 - 178333984 1 96

GTG ...

VLL ...

23444 11 - 96828174 - 96829444 2 84

GTG ...

VGM ...

23446 11 + 69324192 - 69324407 2 78

ATG ...

MEC ...

23448 11 - 120382469 - 120383387 2 249

CTG ...

LLL ...

23450 11 + 106051839 - 106053737 2 135

TTG ...

LTS ...

23452 11 + 114686564 - 114690346 2 111

CTG ...

LCC ...

23454 1 + 191825531 - 191825569 1 39

TTG ...

LGC ...

23456 11 - 120579741 - 120580007 2 45

ATG ...

MQH ...

23458 11 - 61264231 - 61265217 2 255

TTG ...

LAS ...

23460 11 + 62883652 - 62885177 2 222

CTG ...

LFF ...

23462 11 - 61168353 - 61174824 2 150

CTG ...

LAA ...

23464 11 - 60789144 - 60789677 2 255

CTG ...

LRL ...

23466 11 - 110327706 - 110329184 2 279

CTG ...

LKN ...

23469 11 - 69602386 - 69602783 2 180

CTG ...

LGD ...

23471 11 + 5099768 - 5100418 2 153

TTG ...

LSS ...

23473 11 - 120382469 - 120383372 2 234

GTG ...

VRT ...

23475 11 - 74699498 - 74724044 2 69

GTG ...

VKD ...

23478 11 - 61159344 - 61160674 2 123

ATG ...

MTM ...

23480 1 + 86064753 - 86064809 1 57

CTG ...

LWT ...

23483 11 - 61159344 - 61160593 2 42

ATG ...

MLH ...

23485 11 - 120595150 - 120595297 2 48

TTG ...

LSH ...

23487 11 - 100438529 - 100440254 3 132

GTG ...

VIS ...

23489 1 + 191348387 - 191348479 1 93

TTG ...

LTR ...

23491 11 - 59785196 - 59787383 2 192

TTG ...

LAA ...

23493 11 - 120561248 - 120562377 3 114

GTG ...

VQT ...

23495 11 - 121117623 - 121117860 2 108

CTG ...

LEA ...

23497 11 + 93908873 - 93910331 2 114

GTG ...

VFP ...

23500 11 - 100436206 - 100440900 3 177

CTG ...

LMR ...

23503 11 + 117812676 - 117813475 3 219

TTG ...

LAT ...

23505 11 - 5875209 - 5876812 2 105

CTG ...

LGE ...

23507 11 - 84913408 - 84916299 4 180

TTG ...

LEK ...

23509 11 - 69919317 - 69921041 3 132

GTG ...

VRE ...

23512 11 - 59807915 - 59809703 2 45

CTG ...

LGW ...

23514 11 - 59807915 - 59809793 2 135

TTG ...

LPR ...

23516 11 - 55395858 - 55398554 2 99

TTG ...

LMG ...

23519 11 + 54866503 - 54869899 2 150

TTG ...

LPR ...

23521 11 - 93955506 - 93960737 2 189

TTG ...

LER ...

23523 1 + 191596244 - 191596408 1 165

CTG ...

LAS ...

23525 11 - 120963856 - 120964977 2 81

CTG ...

LLV ...

23527 11 - 69980027 - 69980417 4 237

CTG ...

LER ...

23529 11 - 106168455 - 106173357 3 240

TTG ...

LMT ...

23531 11 - 106168455 - 106173312 3 195

GTG ...

VTV ...

23533 11 + 78251033 - 78254857 2 183

GTG ...

VTG ...

23535 11 - 51991469 - 51997935 4 159

ATG ...

MFN ...

23537 11 - 54756425 - 54787625 2 201

CTG ...

LEA ...

23539 11 - 55450470 - 55454916 3 192

CTG ...

LKP ...

23541 11 - 120561248 - 120562243 2 96

TTG ...

LIT ...

Previous 204 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5