Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

23318 11 - 62533887 - 62536339 2 126

GTG ...

VEQ ...

23321 11 + 50131460 - 50131869 2 105

GTG ...

VLV ...

23323 11 + 29209349 - 29211146 2 117

CTG ...

LKD ...

23326 11 - 69917725 - 69919284 3 243

ATG ...

MQG ...

23328 1 + 125585085 - 125585237 1 153

CTG ...

LFN ...

23330 11 - 58934198 - 58937192 2 87

ATG ...

MMP ...

23332 1 - 177796170 - 177796358 1 189

CTG ...

LPN ...

23335 11 - 6108245 - 6113305 2 174

CTG ...

LDR ...

23337 11 + 43433790 - 43437389 3 75

ATG ...

MVL ...

23340 11 - 69741805 - 69742414 2 249

CTG ...

LAT ...

23343 11 + 51763710 - 51777494 2 90

CTG ...

LAA ...

23345 1 + 127205389 - 127205424 1 36

CTG ...

LLL ...

23348 11 + 101284799 - 101286367 3 276

CTG ...

LGY ...

23350 11 - 50296282 - 50297174 3 171

GTG ...

VKI ...

23352 11 + 54353009 - 54361197 2 192

CTG ...

LDD ...

23355 11 - 69602822 - 69603078 2 156

ATG ...

MSL ...

23357 11 - 59830305 - 59836952 4 228

CTG ...

LDT ...

23360 11 - 21558520 - 21559318 3 159

GTG ...

VSH ...

23362 11 + 78250476 - 78254857 3 270

GTG ...

VLV ...

23364 11 + 59948466 - 59960596 2 51

ATG ...

MSS ...

23366 11 - 118310608 - 118317424 2 99

TTG ...

LQE ...

23368 1 + 165763825 - 165763971 1 147

CTG ...

LPF ...

23371 11 - 106204873 - 106205389 2 189

CTG ...

LRL ...

23373 11 - 61159344 - 61160626 2 75

TTG ...

LTR ...

23375 11 + 48803940 - 48804210 2 84

ATG ...

MDP ...

23378 11 - 101100190 - 101102024 3 174

CTG ...

LLS ...

23380 11 - 101100190 - 101102057 3 207

TTG ...

LAM ...

23383 11 + 62883676 - 62885177 2 198

GTG ...

VVY ...

23385 11 + 69938344 - 69939919 3 168

ATG ...

MTP ...

23387 11 - 120108909 - 120110093 3 168

GTG ...

VES ...

23389 1 + 79776157 - 79776315 1 159

CTG ...

LQQ ...

23391 11 - 77509261 - 77509623 2 39

CTG ...

LTS ...

23394 1 - 74283874 - 74283978 1 105

ATG ...

MTR ...

23396 1 + 191583210 - 191583383 1 174

GTG ...

VTQ ...

23398 11 + 69939287 - 69939919 2 87

ATG ...

MGR ...

23400 11 + 29736397 - 29742029 3 204

TTG ...

LVQ ...

23402 1 - 55355643 - 55355678 1 36

TTG ...

LLM ...

23405 11 - 67925218 - 67945391 3 147

CTG ...

LAD ...

23407 1 - 165350868 - 165350924 1 57

TTG ...

LIP ...

23410 11 - 6429213 - 6433764 2 54

CTG ...

LCT ...

23412 11 - 84422956 - 84445742 4 252

GTG ...

VVM ...

23414 11 - 4702202 - 4704245 2 108

TTG ...

LPS ...

23416 11 + 4728602 - 4732011 3 183

CTG ...

LDE ...

23418 11 - 59785196 - 59787308 2 117

CTG ...

LHQ ...

23420 11 - 61546864 - 61565830 2 57

GTG ...

VDK ...

23423 11 - 106168455 - 106173267 3 150

GTG ...

VTF ...

23426 11 + 75755602 - 75756818 2 81

GTG ...

VTF ...

23428 11 - 51997814 - 52000345 2 138

CTG ...

LRS ...

23431 11 + 119913884 - 119915526 2 168

CTG ...

LFG ...

23433 11 - 55450470 - 55454928 3 204

GTG ...

VRA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5