Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

25272 1 - 172069972 - 172070007 1 36

CTG ...

LAD ...

25274 12 + 3960092 - 3960190 1 99

ATG ...

MAV ...

25276 1 - 86355012 - 86355074 1 63

GTG ...

VFG ...

25278 12 + 85220149 - 85220265 1 117

TTG ...

LTS ...

25280 12 + 55418212 - 55418280 1 69

GTG ...

VVF ...

25282 12 + 111539494 - 111539679 1 186

ATG ...

MSE ...

25284 12 - 87355500 - 87355550 1 51

GTG ...

VCS ...

25286 12 + 85746790 - 85746858 1 69

CTG ...

LLT ...

25288 12 + 8922092 - 8922196 1 105

GTG ...

VDT ...

25290 12 + 8982784 - 8982906 1 123

CTG ...

LKG ...

25292 12 + 85889209 - 85889244 1 36

TTG ...

LEV ...

25295 12 + 70466047 - 70466112 1 66

ATG ...

MFQ ...

25297 12 + 105829152 - 105829343 1 192

CTG ...

LVN ...

25299 12 + 111539591 - 111539686 1 96

TTG ...

LIK ...

25301 12 + 70456014 - 70456094 1 81

ATG ...

MLP ...

25303 12 - 84437971 - 84438000 1 30

ATG ...

MAR ...

25305 12 + 110659145 - 110659306 1 162

CTG ...

LSA ...

25307 12 + 100199533 - 100199589 1 57

GTG ...

VVL ...

25309 12 + 8936723 - 8936782 1 60

CTG ...

LLQ ...

25311 12 - 54861553 - 54861600 1 48

TTG ...

LPI ...

25313 12 + 102899320 - 102899511 1 192

GTG ...

VVS ...

25315 12 + 76875080 - 76875127 1 48

CTG ...

LEL ...

25317 12 - 3309476 - 3309658 1 183

CTG ...

LGE ...

25319 12 - 25095314 - 25095358 1 45

CTG ...

LSL ...

25321 12 + 9019924 - 9020043 1 120

CTG ...

LAE ...

25323 12 + 83674522 - 83674770 1 249

GTG ...

VSS ...

25325 12 + 105800712 - 105800762 1 51

CTG ...

LVK ...

25327 12 + 105800715 - 105800762 1 48

GTG ...

VKE ...

25329 12 - 87341533 - 87341568 1 36

GTG ...

VLQ ...

25331 12 + 76782825 - 76782905 1 81

CTG ...

LCL ...

25333 12 - 69198068 - 69198304 1 237

TTG ...

LGR ...

25335 12 + 8934909 - 8934992 1 84

TTG ...

LTS ...

25337 12 + 105818811 - 105818903 1 93

CTG ...

LVG ...

25339 12 - 110883966 - 110884025 1 60

CTG ...

LSY ...

25341 12 + 4817708 - 4817770 1 63

CTG ...

LTP ...

25343 12 + 59013549 - 59013617 1 69

TTG ...

LTE ...

25345 1 + 153447801 - 153447998 1 198

GTG ...

VKL ...

25347 1 + 190928553 - 190928594 1 42

GTG ...

VTG ...

25350 12 + 9022773 - 9022970 1 198

CTG ...

LLA ...

25352 12 + 9016498 - 9016644 1 147

GTG ...

VRC ...

25354 12 + 76405663 - 76405731 1 69

CTG ...

LCR ...

25356 12 - 81484989 - 81485078 1 90

GTG ...

VDL ...

25358 12 + 103315809 - 103315838 1 30

ATG ...

MES ...

25361 1 - 178330583 - 178330798 1 216

ATG ...

MLN ...

25363 1 - 121319762 - 121319848 1 87

ATG ...

MKP ...

25366 12 - 69198068 - 69198358 1 291

CTG ...

LKR ...

25368 12 + 17277242 - 17277376 1 135

TTG ...

LRQ ...

25370 12 + 111539410 - 111539679 1 270

CTG ...

LLR ...

25372 1 - 178330158 - 178330331 1 174

GTG ...

VDI ...

25374 12 + 9024251 - 9024364 1 114

GTG ...

VLS ...

Previous 220 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5