Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

22866 11 - 6433807 - 6444398 4 171

CTG ...

LRE ...

22868 11 - 69980027 - 69980390 4 210

CTG ...

LRI ...

22870 11 - 97181738 - 97184961 2 123

TTG ...

LML ...

22872 11 + 120099055 - 120099202 2 66

GTG ...

VEL ...

22874 1 - 36578486 - 36578587 1 102

CTG ...

LGI ...

22876 11 - 50200930 - 50202425 2 45

CTG ...

LPY ...

22878 11 - 55395858 - 55398551 2 96

ATG ...

MGT ...

22880 11 - 50296320 - 50297104 2 63

GTG ...

VLL ...

22882 1 - 181001795 - 181001956 1 162

CTG ...

LCW ...

22885 11 + 106237049 - 106238618 2 186

GTG ...

VYG ...

22888 1 - 118300932 - 118300967 1 36

ATG ...

MSW ...

22890 11 + 102190019 - 102190266 2 132

CTG ...

LGD ...

22892 11 - 120712629 - 120713725 2 117

GTG ...

VAM ...

22895 11 + 31975080 - 31978260 4 120

TTG ...

LQR ...

22897 11 - 51606584 - 51606735 2 72

GTG ...

VTA ...

22899 11 + 80383348 - 80386012 3 258

CTG ...

LVA ...

22901 11 - 75312139 - 75312785 3 258

GTG ...

VKS ...

22904 11 - 115268324 - 115268728 2 282

GTG ...

VKR ...

22906 1 - 82563399 - 82563437 1 39

CTG ...

LSA ...

22908 11 - 98438062 - 98438383 3 231

GTG ...

VVP ...

22910 11 + 3514978 - 3516275 2 111

CTG ...

LLL ...

22913 1 + 75146912 - 75147055 1 144

CTG ...

LEQ ...

22915 11 + 69940389 - 69940759 2 213

ATG ...

MNG ...

22917 11 + 52118090 - 52118705 2 108

ATG ...

MQM ...

22919 11 - 62525163 - 62527618 3 252

CTG ...

LFS ...

22921 11 + 3514996 - 3516275 2 93

GTG ...

VAP ...

22923 11 - 116851701 - 116852200 3 231

CTG ...

LPE ...

22925 11 - 102306641 - 102307026 3 297

CTG ...

LLM ...

22928 11 - 29221884 - 29222619 3 288

ATG ...

MNI ...

22930 11 - 5062151 - 5062496 2 258

GTG ...

VMV ...

22932 11 + 78059062 - 78059233 2 72

GTG ...

VHA ...

22934 11 - 101414057 - 101417149 2 87

ATG ...

MWF ...

22937 11 - 68829911 - 68833476 3 279

ATG ...

MLF ...

22940 11 - 120543684 - 120544699 3 186

GTG ...

VRF ...

22942 11 - 102403420 - 102403777 3 261

GTG ...

VRG ...

22944 11 - 120383378 - 120384562 2 42

ATG ...

MKS ...

22947 11 - 6624263 - 6626028 3 150

ATG ...

MEV ...

22949 11 + 30954515 - 30998317 2 60

CTG ...

LTP ...

22952 11 - 120433125 - 120437581 3 87

CTG ...

LRG ...

22954 11 - 59836887 - 59839811 2 276

GTG ...

VGR ...

22957 11 - 115609282 - 115609609 2 225

TTG ...

LWT ...

22960 11 - 115268324 - 115268608 2 162

GTG ...

VAI ...

22962 1 + 134415861 - 134415950 1 90

GTG ...

VRE ...

22964 11 - 101411174 - 101411419 2 177

TTG ...

LDS ...

22967 11 - 59836887 - 59839700 2 165

GTG ...

VNS ...

22969 11 - 115269870 - 115271285 3 159

CTG ...

LTP ...

22971 11 + 102189938 - 102190266 2 213

CTG ...

LSA ...

22973 11 - 101093003 - 101093773 2 99

GTG ...

VMR ...

22975 11 - 59785196 - 59787386 2 195

CTG ...

LLA ...

22977 11 - 69602822 - 69603054 2 132

CTG ...

LKA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5