Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

22751 1 + 60105391 - 60105420 1 30

ATG ...

MLY ...

22754 11 + 95387911 - 95389092 2 30

TTG ...

LES ...

22756 11 - 120543684 - 120543970 2 132

CTG ...

LSS ...

22758 11 + 62551805 - 62552161 3 69

ATG ...

MES ...

22761 11 + 32205593 - 32206969 3 81

CTG ...

LWT ...

22764 1 + 134410981 - 134411079 1 99

CTG ...

LLL ...

22766 11 - 100438529 - 100440230 3 108

CTG ...

LSR ...

22769 11 - 116485865 - 116490199 3 276

CTG ...

LLP ...

22771 11 - 5875209 - 5876848 2 141

GTG ...

VAT ...

22773 11 - 59836887 - 59839712 2 177

CTG ...

LEQ ...

22776 11 - 59947871 - 59948067 2 117

ATG ...

MTE ...

22779 11 - 59818055 - 59818514 3 150

ATG ...

MTL ...

22782 11 + 51763692 - 51777494 2 108

CTG ...

LRR ...

22784 11 - 50301810 - 50304347 2 84

ATG ...

MLS ...

22786 11 - 120595150 - 120595282 2 33

TTG ...

LIH ...

22788 11 + 50131514 - 50131869 2 51

CTG ...

LQR ...

22790 11 - 17211137 - 17211398 2 87

ATG ...

MEK ...

22792 11 - 53267052 - 53269731 3 207

GTG ...

VRS ...

22794 11 - 97036114 - 97036533 3 156

TTG ...

LVS ...

22796 11 + 62883697 - 62885177 2 177

CTG ...

LLS ...

22798 11 - 6273815 - 6274172 2 138

GTG ...

VTI ...

22800 1 + 191583234 - 191583383 1 150

CTG ...

LEK ...

22803 11 - 55395858 - 55398593 2 138

CTG ...

LST ...

22805 11 + 17194231 - 17194865 2 243

GTG ...

VSQ ...

22807 11 - 115609075 - 115609595 3 144

CTG ...

LQD ...

22809 11 - 100591035 - 100592862 3 189

GTG ...

VAS ...

22811 11 - 6274421 - 6274826 2 231

GTG ...

VLG ...

22813 11 + 101284859 - 101286367 3 216

CTG ...

LNF ...

22815 11 - 115269870 - 115271300 3 174

GTG ...

VAR ...

22817 11 - 59785196 - 59787395 2 204

CTG ...

LRA ...

22819 11 + 26387239 - 26422458 2 123

TTG ...

LRH ...

22822 1 + 179685749 - 179685781 1 33

CTG ...

LSD ...

22824 11 - 29221884 - 29222592 3 261

CTG ...

LNQ ...

22826 11 - 105935375 - 105935786 3 228

CTG ...

LGL ...

22828 11 - 99022332 - 99022857 2 117

GTG ...

VEL ...

22830 11 + 115583326 - 115583822 2 204

GTG ...

VIF ...

22832 11 - 5062151 - 5062490 2 252

GTG ...

VRV ...

22834 1 + 191596217 - 191596408 1 192

CTG ...

LQH ...

22836 11 - 62525163 - 62527624 3 258

TTG ...

LSL ...

22839 11 - 21565884 - 21566651 2 69

TTG ...

LEM ...

22842 11 + 78250503 - 78254857 3 243

ATG ...

MKI ...

22844 11 + 5099828 - 5100418 2 93

CTG ...

LYT ...

22846 11 - 115269870 - 115271363 3 237

CTG ...

LAP ...

22848 11 + 59948421 - 59960596 2 96

CTG ...

LAR ...

22852 11 - 54740402 - 54756424 2 168

GTG ...

VAT ...

22855 11 - 115503134 - 115514250 2 72

GTG ...

VWT ...

22857 11 - 59836887 - 59839754 2 219

CTG ...

LLL ...

22859 11 - 102154509 - 102155825 2 297

GTG ...

VKR ...

22861 1 + 45818839 - 45818928 1 90

TTG ...

LNV ...

22864 11 - 106204873 - 106205392 2 192

TTG ...

LLR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5