Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

22636 11 - 97175757 - 97177289 2 138

ATG ...

MSV ...

22638 11 - 116289183 - 116289691 3 270

TTG ...

LVP ...

22641 1 - 179752303 - 179752389 1 87

TTG ...

LTD ...

22643 11 - 86784796 - 86785800 2 285

TTG ...

LEA ...

22645 11 + 50383200 - 50383798 2 234

GTG ...

VRV ...

22647 11 - 107186788 - 107189248 2 267

CTG ...

LEE ...

22650 11 - 115608386 - 115609096 2 264

CTG ...

LAQ ...

22652 11 - 32241794 - 32250143 3 243

GTG ...

VSA ...

22654 11 + 48803928 - 48804210 2 96

CTG ...

LSL ...

22656 11 + 78058990 - 78059233 2 144

GTG ...

VVL ...

22658 11 - 70235404 - 70236180 2 222

GTG ...

VYE ...

22661 11 - 50308915 - 50310392 2 36

ATG ...

MKL ...

22663 11 - 62533887 - 62536291 2 78

TTG ...

LTA ...

22666 11 - 70235460 - 70235783 4 93

CTG ...

LND ...

22669 11 - 120579231 - 120579591 3 276

GTG ...

VSP ...

22671 11 - 106204873 - 106205419 2 219

GTG ...

VFA ...

22674 11 - 116289183 - 116289634 2 213

CTG ...

LCK ...

22677 11 - 5534376 - 5534819 2 60

CTG ...

LEN ...

22679 11 - 120563866 - 120567970 2 108

GTG ...

VCS ...

22681 11 - 5875209 - 5876737 2 30

GTG ...

VSR ...

22683 11 - 106168455 - 106173258 3 141

TTG ...

LQG ...

22686 11 + 101470805 - 101471306 2 297

CTG ...

LRE ...

22688 11 + 5099795 - 5100418 2 126

CTG ...

LNA ...

22690 11 - 50296320 - 50297119 2 78

ATG ...

MLK ...

22692 11 - 100705238 - 100705627 2 246

GTG ...

VKK ...

22694 11 + 109660138 - 109661071 2 69

CTG ...

LRR ...

22696 11 + 48803952 - 48804210 2 72

GTG ...

VLL ...

22698 11 - 97167625 - 97168899 2 105

ATG ...

MTS ...

22700 11 - 60789144 - 60789638 2 216

TTG ...

LEE ...

22702 11 + 106051875 - 106053737 2 99

ATG ...

MKT ...

22704 11 + 115583356 - 115583822 2 174

CTG ...

LMR ...

22706 11 + 59204687 - 59205658 2 81

CTG ...

LCS ...

22708 11 - 21558467 - 21559244 2 138

CTG ...

LRK ...

22710 11 - 51997814 - 52000360 2 153

CTG ...

LTA ...

22713 11 - 84422956 - 84445748 4 258

CTG ...

LWV ...

22715 11 + 69997810 - 69998535 3 264

ATG ...

MLV ...

22717 11 - 61264231 - 61265235 2 273

TTG ...

LGN ...

22720 11 + 78251099 - 78254857 2 117

GTG ...

VCE ...

22722 11 - 78507710 - 78508734 4 291

GTG ...

VFC ...

22725 11 + 120495059 - 120495491 3 111

CTG ...

LGG ...

22727 1 + 160906608 - 160906673 1 66

ATG ...

MVA ...

22730 11 + 101552896 - 101554014 2 87

CTG ...

LAA ...

22732 11 - 53267052 - 53269767 3 243

GTG ...

VRP ...

22734 11 - 59785196 - 59787293 2 102

GTG ...

VRV ...

22736 11 + 50384682 - 50385190 2 105

CTG ...

LSG ...

22739 1 + 181155921 - 181155971 1 51

CTG ...

LVH ...

22742 11 - 116471397 - 116472275 2 258

CTG ...

LKE ...

22744 11 - 100591035 - 100591528 2 144

CTG ...

LYV ...

22747 11 - 61159344 - 61161349 3 162

TTG ...

LQP ...

22749 11 - 115268725 - 115269831 2 159

GTG ...

VEE ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5