Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

22527 11 - 115268324 - 115268650 2 204

CTG ...

LKA ...

22529 11 + 120471567 - 120475248 4 288

GTG ...

VVQ ...

22532 11 - 5875209 - 5876896 2 189

CTG ...

LLA ...

22534 11 - 6429213 - 6439440 2 78

CTG ...

LEK ...

22536 11 + 67682701 - 67683451 2 147

CTG ...

LRH ...

22538 11 + 4730240 - 4732251 2 213

CTG ...

LQE ...

22540 11 + 54353021 - 54361197 2 180

GTG ...

VML ...

22542 1 + 70299734 - 70299772 1 39

CTG ...

LDM ...

22544 11 - 59785196 - 59787365 2 174

TTG ...

LEL ...

22546 11 + 115583368 - 115583822 2 162

CTG ...

LED ...

22548 11 + 4905642 - 4911563 3 282

CTG ...

LAE ...

22550 11 - 116471397 - 116472305 2 288

GTG ...

VES ...

22552 1 - 128389115 - 128389180 1 66

CTG ...

LNL ...

22554 11 - 120711292 - 120711404 2 30

GTG ...

VLP ...

22556 11 + 102192066 - 102193139 3 222

GTG ...

VHE ...

22560 1 + 156051799 - 156051891 1 93

CTG ...

LLL ...

22562 11 + 101284781 - 101286367 3 294

CTG ...

LNF ...

22564 11 - 120411663 - 120413681 2 204

TTG ...

LTS ...

22566 11 - 84911467 - 84914232 3 285

GTG ...

VRS ...

22568 11 - 106168455 - 106173348 3 231

GTG ...

VNL ...

22570 11 + 78059017 - 78059233 2 117

GTG ...

VTS ...

22572 11 + 50378364 - 50379661 2 258

GTG ...

VVK ...

22574 11 + 80383384 - 80386012 3 222

TTG ...

LGF ...

22576 11 - 53267052 - 53268554 2 132

CTG ...

LKS ...

22578 1 + 191607877 - 191608086 1 210

GTG ...

VVD ...

22580 11 - 55399296 - 55402061 2 141

ATG ...

MTT ...

22582 11 - 101100190 - 101102084 3 234

CTG ...

LLS ...

22584 11 - 100589745 - 100590973 3 213

CTG ...

LYT ...

22587 11 - 17203934 - 17208928 4 279

ATG ...

MAC ...

22589 11 - 103679236 - 103683899 2 270

CTG ...

LQF ...

22591 11 + 55485671 - 55487148 2 99

CTG ...

LVG ...

22593 11 - 115269870 - 115271312 3 186

GTG ...

VAL ...

22596 11 + 109660126 - 109661071 2 81

CTG ...

LKF ...

22598 11 + 62602944 - 62603235 2 81

GTG ...

VTV ...

22600 11 - 86664650 - 86665864 2 228

CTG ...

LIY ...

22602 11 - 21559684 - 21562951 2 279

CTG ...

LTA ...

22604 11 - 120543946 - 120544782 2 162

TTG ...

LST ...

22606 11 - 106783989 - 106784103 2 33

ATG ...

MNS ...

22608 11 - 61159344 - 61160608 2 57

GTG ...

VGS ...

22610 11 - 51991469 - 51997944 4 168

CTG ...

LAY ...

22614 11 + 78251042 - 78254857 2 174

GTG ...

VTS ...

22616 1 - 65171108 - 65171155 1 48

GTG ...

VLP ...

22619 11 - 100583553 - 100584304 2 198

GTG ...

VGE ...

22621 11 - 34091598 - 34096767 2 66

GTG ...

VKK ...

22623 1 + 150436741 - 150436908 1 168

TTG ...

LPK ...

22625 11 + 101286916 - 101287411 2 42

GTG ...

VPS ...

22627 1 - 118311086 - 118311127 1 42

TTG ...

LWV ...

22629 11 - 115609075 - 115609381 2 33

CTG ...

LQK ...

22632 11 - 6433807 - 6444416 4 189

CTG ...

LAA ...

22634 11 + 69396237 - 69396632 2 237

TTG ...

LLN ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5