Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

22410 11 - 74684482 - 74685919 2 51

TTG ...

LNA ...

22412 11 - 101288955 - 101290516 3 105

CTG ...

LHP ...

22415 11 + 50378382 - 50379661 2 240

TTG ...

LPW ...

22417 11 + 78059038 - 78059233 2 96

CTG ...

LLA ...

22420 11 - 6274421 - 6274766 2 171

GTG ...

VLR ...

22422 11 - 6274421 - 6274853 3 258

ATG ...

MCK ...

22424 11 - 60789144 - 60789656 2 234

TTG ...

LTS ...

22426 11 - 100590982 - 100591602 3 261

TTG ...

LYT ...

22429 11 + 49846898 - 49854251 2 117

GTG ...

VEL ...

22431 11 - 69980027 - 69980444 4 264

TTG ...

LSL ...

22433 1 - 67020892 - 67020942 1 51

GTG ...

VAM ...

22435 11 + 117812649 - 117813475 3 246

ATG ...

MPL ...

22437 11 - 96913864 - 96916184 2 48

GTG ...

VPI ...

22440 1 + 38046636 - 38046782 1 147

GTG ...

VEA ...

22442 11 - 53267052 - 53269740 3 216

CTG ...

LKR ...

22444 11 + 54353027 - 54361197 2 174

CTG ...

LGK ...

22447 11 - 99022332 - 99022935 2 195

TTG ...

LSI ...

22449 11 + 69939281 - 69939919 2 93

TTG ...

LEM ...

22451 11 + 69991759 - 69992368 2 48

CTG ...

LRA ...

22453 11 - 120543684 - 120543946 2 108

GTG ...

VEE ...

22455 11 - 97167625 - 97168953 3 159

TTG ...

LFF ...

22457 11 + 69396297 - 69396632 2 177

CTG ...

LCT ...

22459 11 - 98438062 - 98438353 3 201

CTG ...

LLF ...

22461 11 + 78262761 - 78264045 3 252

TTG ...

LAP ...

22464 11 + 4905717 - 4911563 3 207

CTG ...

LSS ...

22467 11 - 120596040 - 120597711 2 105

GTG ...

VEP ...

22469 11 + 50131463 - 50131869 2 102

CTG ...

LVA ...

22472 11 - 50200790 - 50202528 3 288

GTG ...

VDP ...

22475 11 - 101100190 - 101100994 2 90

CTG ...

LKP ...

22477 11 - 115609247 - 115609607 2 258

GTG ...

VDH ...

22480 11 - 100718553 - 100720049 2 165

ATG ...

MDQ ...

22482 11 - 115268324 - 115268638 2 192

CTG ...

LLP ...

22484 11 - 21558467 - 21559289 2 183

GTG ...

VLL ...

22486 11 - 104425027 - 104467665 3 294

ATG ...

MYS ...

22489 11 + 61506383 - 61507807 2 210

GTG ...

VYG ...

22492 1 + 172101397 - 172101462 1 66

TTG ...

LTP ...

22494 11 - 84422956 - 84445754 4 264

CTG ...

LFL ...

22496 11 - 115699242 - 115699913 2 129

GTG ...

VEL ...

22499 11 - 59785196 - 59787398 2 207

CTG ...

LLR ...

22502 11 - 53264971 - 53265980 2 228

GTG ...

VYE ...

22504 11 + 78262791 - 78264045 3 222

ATG ...

MSV ...

22506 1 - 163968133 - 163968282 1 150

CTG ...

LPT ...

22509 11 - 84911467 - 84913249 2 210

GTG ...

VSL ...

22511 11 + 101286898 - 101287411 2 60

TTG ...

LES ...

22514 11 - 21559684 - 21562900 2 228

CTG ...

LTR ...

22516 1 - 121327619 - 121327741 1 123

CTG ...

LKM ...

22519 11 + 67682638 - 67683451 2 210

CTG ...

LER ...

22521 11 + 50378367 - 50379661 2 255

GTG ...

VKV ...

22523 11 - 32241794 - 32248176 2 174

CTG ...

LAR ...

22525 11 - 50296320 - 50297122 2 81

GTG ...

VML ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5