Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

22283 11 - 69602822 - 69603081 2 159

TTG ...

LMS ...

22287 11 - 101093003 - 101093770 2 96

ATG ...

MRT ...

22290 11 + 55485689 - 55487148 2 81

GTG ...

VRQ ...

22293 11 - 103679236 - 103683803 2 174

CTG ...

LTL ...

22295 11 - 98170433 - 98171748 3 135

CTG ...

LAL ...

22298 11 - 106164039 - 106164547 3 270

GTG ...

VRQ ...

22301 11 - 106164039 - 106164754 3 231

GTG ...

VEQ ...

22304 11 - 116080321 - 116080596 2 75

ATG ...

MEC ...

22307 11 + 55103708 - 55108955 2 99

TTG ...

LRA ...

22309 11 - 97036114 - 97036500 2 123

TTG ...

LRT ...

22313 11 - 69975184 - 69979842 2 90

ATG ...

MST ...

22315 11 + 70525431 - 70525927 2 108

CTG ...

LHR ...

22317 11 + 40733996 - 40736086 2 228

GTG ...

VVP ...

22320 11 - 84422956 - 84445736 4 246

ATG ...

MHN ...

22323 11 - 120563866 - 120567973 2 111

GTG ...

VVC ...

22325 11 - 69602822 - 69603072 2 150

TTG ...

LST ...

22327 11 + 5099799 - 5100425 2 129

ATG ...

MRP ...

22330 11 - 69980027 - 69980447 4 267

ATG ...

MLS ...

22332 1 - 178329277 - 178329402 1 126

CTG ...

LGS ...

22334 11 - 86585308 - 86586573 2 222

CTG ...

LQK ...

22337 11 + 69395902 - 69396231 2 126

CTG ...

LGR ...

22340 11 - 61159344 - 61160677 2 126

GTG ...

VMT ...

22343 11 - 6433807 - 6444362 4 135

GTG ...

VGV ...

22345 11 - 6429213 - 6433767 2 57

CTG ...

LLC ...

22347 11 - 106264159 - 106264579 3 285

TTG ...

LTQ ...

22351 11 + 50378409 - 50379661 2 213

GTG ...

VQR ...

22354 11 + 69838604 - 69839289 3 180

TTG ...

LSG ...

22357 11 - 5875209 - 5876740 2 33

CTG ...

LVS ...

22359 11 - 69980027 - 69980234 2 54

GTG ...

VVW ...

22361 1 + 70724886 - 70724942 1 57

CTG ...

LGE ...

22363 11 - 120711292 - 120711814 4 216

GTG ...

VGH ...

22365 11 - 6274421 - 6274724 2 129

CTG ...

LRS ...

22367 11 + 100625143 - 100626233 2 282

CTG ...

LLK ...

22370 11 - 29245121 - 29247125 2 141

CTG ...

LRK ...

22372 11 + 120494573 - 120495491 4 234

CTG ...

LSA ...

22377 11 - 116471397 - 116472203 2 186

CTG ...

LIE ...

22379 11 - 115608386 - 115609129 2 297

CTG ...

LVN ...

22382 1 - 10034043 - 10034135 1 93

TTG ...

LAA ...

22384 11 - 116082366 - 116083897 2 105

ATG ...

MCQ ...

22386 1 + 172130636 - 172130800 1 165

CTG ...

LMK ...

22389 1 - 65030564 - 65030602 1 39

CTG ...

LCL ...

22391 11 - 34091598 - 34096800 2 99

ATG ...

MIK ...

22393 11 - 101100190 - 101102021 3 171

CTG ...

LSY ...

22395 11 - 53430622 - 53430793 3 87

CTG ...

LEG ...

22398 11 + 117812655 - 117813475 3 240

CTG ...

LTE ...

22400 11 + 80383393 - 80386012 3 213

TTG ...

LFF ...

22402 11 - 116485865 - 116488154 2 108

TTG ...

LGK ...

22404 11 + 50378337 - 50379661 2 285

CTG ...

LGA ...

22406 11 - 120561248 - 120562189 2 42

GTG ...

VAR ...

22408 11 - 69602386 - 69602825 2 222

CTG ...

LNY ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5