Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

22161 11 + 50379902 - 50379988 1 87

TTG ...

LYG ...

22163 11 + 72451256 - 72451474 1 219

GTG ...

VNG ...

22165 11 - 78507710 - 78507799 1 90

CTG ...

LAA ...

22167 11 - 98438233 - 98438292 1 60

ATG ...

MDS ...

22169 11 + 100624217 - 100624270 1 54

CTG ...

LQG ...

22171 11 + 70647607 - 70647693 1 87

CTG ...

LFA ...

22173 11 + 106037074 - 106037190 1 117

GTG ...

VPQ ...

22175 1 + 172179969 - 172180016 1 48

CTG ...

LPI ...

22178 11 + 87201392 - 87201634 1 243

CTG ...

LKR ...

22180 11 + 117360481 - 117360555 1 75

GTG ...

VKR ...

22182 11 - 69602705 - 69602809 1 105

GTG ...

VPA ...

22184 11 + 35121328 - 35121387 1 60

ATG ...

MEL ...

22186 11 + 17194746 - 17194865 1 120

GTG ...

VGN ...

22188 11 - 115514272 - 115514334 1 63

CTG ...

LLV ...

22190 11 - 106782559 - 106782615 1 57

CTG ...

LLA ...

22192 11 - 51997804 - 51997857 1 54

CTG ...

LKT ...

22194 11 + 67665419 - 67665466 1 48

CTG ...

LAK ...

22196 11 - 96777030 - 96777506 2 84

ATG ...

MVR ...

22200 11 - 6274421 - 6274751 2 156

GTG ...

VGS ...

22202 11 - 6429213 - 6433755 2 45

GTG ...

VPQ ...

22204 11 + 62883727 - 62885177 2 147

GTG ...

VTI ...

22207 11 + 52118123 - 52118705 2 75

TTG ...

LTI ...

22209 11 - 100720130 - 100738122 2 84

CTG ...

LWK ...

22211 11 - 100889516 - 100893293 4 288

GTG ...

VTG ...

22213 11 + 54866494 - 54869899 2 159

CTG ...

LTR ...

22215 11 - 116485865 - 116490196 3 273

CTG ...

LPP ...

22218 11 + 4728641 - 4732011 3 144

CTG ...

LTG ...

22221 11 - 120543946 - 120544686 2 66

ATG ...

MKP ...

22224 11 - 116079543 - 116079917 3 264

GTG ...

VTF ...

22227 11 + 67682683 - 67683451 2 165

CTG ...

LCQ ...

22229 11 - 120543946 - 120544815 3 195

ATG ...

MAL ...

22231 11 + 67682647 - 67683451 2 201

CTG ...

LEV ...

22237 1 - 67038768 - 67038833 1 66

CTG ...

LER ...

22240 11 - 6274421 - 6274823 2 228

TTG ...

LGS ...

22242 11 - 96055872 - 96058353 2 117

CTG ...

LRI ...

22244 11 + 67682662 - 67683451 2 186

GTG ...

VEM ...

22246 11 + 78263594 - 78264045 2 180

TTG ...

LTT ...

22249 11 + 4728638 - 4732011 3 147

CTG ...

LLT ...

22251 11 - 116178800 - 116181033 3 252

CTG ...

LAQ ...

22255 11 + 52118153 - 52118705 2 45

ATG ...

MGR ...

22257 11 - 50296320 - 50297116 2 75

CTG ...

LKK ...

22260 11 + 62883739 - 62885177 2 135

TTG ...

LLL ...

22264 11 - 32232951 - 32234016 2 279

CTG ...

LNK ...

22267 11 - 69919317 - 69920830 3 144

TTG ...

LRT ...

22269 11 + 61512415 - 61512794 2 168

GTG ...

VAQ ...

22272 11 + 69997798 - 69998535 3 276

TTG ...

LSW ...

22274 11 + 4728599 - 4732011 3 186

TTG ...

LLD ...

22276 11 + 102190094 - 102190266 2 57

GTG ...

VLW ...

22279 11 - 120382469 - 120383405 2 267

TTG ...

LQD ...

22281 1 + 66700961 - 66701032 1 72

CTG ...

LGA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5