Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

22055 11 - 85191744 - 85191815 1 72

ATG ...

MRK ...

22057 11 - 78223150 - 78223179 1 30

GTG ...

VVT ...

22059 11 + 21148374 - 21148523 1 150

GTG ...

VCS ...

22062 11 - 106782559 - 106782624 1 66

TTG ...

LEE ...

22064 11 + 102666342 - 102666494 1 153

GTG ...

VAA ...

22067 11 + 119268109 - 119268222 1 114

GTG ...

VKA ...

22069 1 + 45814676 - 45814720 1 45

CTG ...

LQM ...

22071 11 - 50325525 - 50325578 1 54

CTG ...

LPL ...

22073 11 + 76945832 - 76945897 1 66

CTG ...

LKT ...

22075 11 - 102404022 - 102404102 1 81

CTG ...

LSG ...

22077 11 + 78516886 - 78516936 1 51

CTG ...

LID ...

22079 11 + 72444781 - 72444981 1 201

GTG ...

VAF ...

22081 11 + 49846898 - 49846996 1 99

GTG ...

VEL ...

22083 11 + 69588628 - 69588771 1 144

CTG ...

LAP ...

22085 11 - 106216191 - 106216232 1 42

CTG ...

LKT ...

22087 11 - 115490797 - 115490958 1 162

GTG ...

VEQ ...

22089 11 + 101120180 - 101120284 1 105

ATG ...

MSE ...

22091 11 - 20709599 - 20709742 1 144

TTG ...

LRG ...

22093 11 + 21148329 - 21148523 1 195

GTG ...

VDA ...

22095 11 + 70000790 - 70000897 1 108

CTG ...

LLG ...

22097 11 - 78510327 - 78510413 1 87

CTG ...

LYL ...

22099 11 + 58331329 - 58331523 1 195

TTG ...

LPP ...

22101 11 + 70647416 - 70647469 1 54

ATG ...

MSN ...

22103 11 - 84449116 - 84449151 1 36

TTG ...

LDP ...

22106 11 - 69602634 - 69602825 1 192

CTG ...

LNY ...

22108 11 + 112785308 - 112785388 1 81

CTG ...

LTI ...

22110 11 - 50311651 - 50311704 1 54

ATG ...

MMT ...

22113 11 + 119268097 - 119268222 1 126

CTG ...

LGE ...

22115 11 - 93965819 - 93965893 1 75

ATG ...

MGS ...

22117 11 - 96911869 - 96911976 1 108

GTG ...

VKD ...

22119 11 - 69602705 - 69602770 1 66

CTG ...

LAL ...

22121 11 + 31061504 - 31061620 1 117

CTG ...

LQN ...

22123 11 + 106284630 - 106284842 1 213

GTG ...

VTR ...

22125 11 + 70649991 - 70650029 1 39

CTG ...

LVL ...

22127 1 - 84731676 - 84731720 1 45

TTG ...

LVG ...

22129 11 - 118355200 - 118355241 1 42

GTG ...

VHC ...

22131 11 - 116083835 - 116083897 1 63

ATG ...

MCQ ...

22133 11 - 49712548 - 49712679 1 132

ATG ...

MKT ...

22135 11 + 52243658 - 52243723 1 66

CTG ...

LRM ...

22137 11 + 58955086 - 58955130 1 45

CTG ...

LPK ...

22139 11 + 78320009 - 78320077 1 69

TTG ...

LLG ...

22141 11 + 78304856 - 78305044 1 189

GTG ...

VNT ...

22143 11 - 3931444 - 3931545 1 102

CTG ...

LPL ...

22145 11 + 72451415 - 72451474 1 60

CTG ...

LLQ ...

22147 1 + 153447769 - 153447804 1 36

ATG ...

MTV ...

22149 11 + 109396089 - 109396160 1 72

TTG ...

LSL ...

22152 11 + 106282801 - 106283079 1 279

CTG ...

LFQ ...

22154 11 - 101278837 - 101278896 1 60

ATG ...

MLR ...

22157 11 - 50311651 - 50311734 1 84

CTG ...

LQL ...

22159 1 + 153445807 - 153446001 1 195

TTG ...

LSS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5