Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

21945 11 + 20201595 - 20201642 1 48

GTG ...

VVA ...

21947 11 + 114686406 - 114686570 1 165

CTG ...

LGV ...

21949 11 + 117352642 - 117352692 1 51

GTG ...

VID ...

21951 11 + 4160396 - 4160476 1 81

TTG ...

LSW ...

21953 11 + 72441459 - 72441581 1 123

CTG ...

LLE ...

21955 11 + 75620320 - 75620403 1 84

CTG ...

LTM ...

21958 11 + 4212795 - 4212914 1 120

CTG ...

LFR ...

21960 11 - 50299012 - 50299257 1 246

TTG ...

LEL ...

21962 1 + 172101433 - 172101462 1 30

GTG ...

VLF ...

21964 11 - 101462945 - 101463016 1 72

TTG ...

LKK ...

21966 11 + 4160445 - 4160540 1 96

TTG ...

LSP ...

21968 11 + 55109481 - 55109558 1 78

GTG ...

VGS ...

21970 11 + 45883717 - 45883818 1 102

GTG ...

VVM ...

21972 1 + 84896540 - 84896716 1 177

CTG ...

LCE ...

21974 11 - 50311651 - 50311692 1 42

TTG ...

LIL ...

21976 11 + 115566654 - 115566767 1 114

GTG ...

VDV ...

21978 1 + 156051521 - 156051595 1 75

GTG ...

VWF ...

21980 11 - 116477122 - 116477319 1 198

CTG ...

LGL ...

21983 1 - 153478004 - 153478114 1 111

CTG ...

LNQ ...

21986 11 - 120543946 - 120543993 1 48

TTG ...

LSE ...

21988 11 - 69968426 - 69968527 1 102

CTG ...

LHP ...

21990 1 + 133136837 - 133136887 1 51

CTG ...

LRI ...

21993 1 - 16645776 - 16645808 1 33

GTG ...

VAV ...

21996 11 - 51988640 - 51988681 1 42

ATG ...

MFR ...

21998 11 + 115583745 - 115583822 1 78

GTG ...

VEM ...

22000 11 + 54866494 - 54866604 1 111

CTG ...

LTR ...

22003 11 + 98687699 - 98687863 1 165

CTG ...

LMQ ...

22005 11 + 51623140 - 51623217 1 78

GTG ...

VKP ...

22007 11 + 58955038 - 58955130 1 93

GTG ...

VTI ...

22009 11 + 5105801 - 5105977 1 177

CTG ...

LQQ ...

22011 11 + 29733633 - 29733713 1 81

TTG ...

LLT ...

22014 11 + 101468291 - 101468329 1 39

GTG ...

VPG ...

22017 11 - 61162770 - 61162976 1 207

CTG ...

LGN ...

22019 11 - 97181669 - 97181701 1 33

ATG ...

MSQ ...

22021 11 + 31058911 - 31059003 1 93

CTG ...

LSS ...

22023 11 - 79248368 - 79248655 1 288

TTG ...

LHG ...

22025 1 + 87297654 - 87297767 1 114

CTG ...

LLV ...

22027 11 + 31081576 - 31081626 1 51

CTG ...

LLA ...

22029 11 - 120137853 - 120137936 1 84

CTG ...

LRQ ...

22031 11 + 106284594 - 106284842 1 249

CTG ...

LEV ...

22033 11 + 98686000 - 98686095 1 96

CTG ...

LPE ...

22035 11 - 98095118 - 98095156 1 39

GTG ...

VGF ...

22038 11 - 69970504 - 69970620 1 117

GTG ...

VDQ ...

22040 11 + 94044376 - 94044426 1 51

ATG ...

MHA ...

22043 11 + 98690527 - 98690667 1 141

TTG ...

LNL ...

22045 1 - 184819221 - 184819325 1 105

GTG ...

VKS ...

22047 11 - 120543684 - 120543731 1 48

CTG ...

LSD ...

22049 11 - 69605226 - 69605336 1 111

GTG ...

VVE ...

22051 11 + 52403235 - 52403453 1 219

CTG ...

LTA ...

22053 11 + 75679404 - 75679478 1 75

GTG ...

VKA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5