Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

21844 11 + 45893944 - 45894132 1 189

GTG ...

VTT ...

21846 11 - 115608386 - 115608613 1 228

GTG ...

VDC ...

21848 1 + 171437556 - 171437705 1 150

CTG ...

LLE ...

21850 11 - 61162770 - 61162904 1 135

CTG ...

LSD ...

21852 11 + 48849834 - 48849989 1 156

GTG ...

VRV ...

21854 11 + 58920417 - 58920629 1 213

GTG ...

VSA ...

21856 11 + 17194231 - 17194296 1 66

GTG ...

VSQ ...

21858 11 - 70978424 - 70978486 1 63

CTG ...

LVT ...

21860 11 - 54756425 - 54756550 1 126

GTG ...

VLS ...

21862 11 + 114675592 - 114675684 1 93

CTG ...

LHS ...

21864 1 - 65032617 - 65032646 1 30

TTG ...

LDL ...

21866 11 + 67682647 - 67682757 1 111

CTG ...

LEV ...

21868 11 - 69616233 - 69616484 1 252

CTG ...

LDG ...

21870 11 - 58322560 - 58322616 1 57

CTG ...

LDP ...

21872 11 - 50943546 - 50943698 1 153

GTG ...

VAL ...

21874 11 + 72445615 - 72445737 1 123

TTG ...

LFH ...

21876 11 + 69089734 - 69089979 1 246

GTG ...

VDI ...

21878 11 + 106286480 - 106286668 1 189

TTG ...

LVC ...

21880 11 + 4213857 - 4214045 1 189

GTG ...

VGL ...

21882 11 - 87983901 - 87983933 1 33

GTG ...

VPH ...

21884 11 + 70940382 - 70940483 1 102

GTG ...

VQL ...

21886 11 + 55103708 - 55103752 1 45

TTG ...

LRA ...

21888 11 - 70958262 - 70958336 1 75

GTG ...

VAY ...

21890 11 + 78339394 - 78339492 1 99

CTG ...

LSL ...

21892 11 + 75612229 - 75612318 1 90

CTG ...

LEP ...

21894 11 - 96913657 - 96913749 1 93

GTG ...

VLT ...

21896 11 + 107994583 - 107994621 1 39

GTG ...

VII ...

21898 11 + 48849690 - 48849989 1 300

GTG ...

VAR ...

21900 11 + 35121334 - 35121387 1 54

CTG ...

LLP ...

21902 1 + 90606581 - 90606667 1 87

CTG ...

LAK ...

21904 11 - 110311276 - 110311356 1 81

GTG ...

VFY ...

21906 11 + 78320343 - 78320456 1 114

TTG ...

LEK ...

21908 11 + 55109508 - 55109558 1 51

TTG ...

LLP ...

21910 11 - 69601248 - 69601352 1 105

GTG ...

VNV ...

21912 11 - 106267330 - 106267374 1 45

GTG ...

VPQ ...

21914 11 + 100571610 - 100571792 1 183

CTG ...

LLG ...

21916 11 - 5541943 - 5542092 1 150

CTG ...

LGS ...

21918 11 - 120597631 - 120597789 1 159

CTG ...

LCL ...

21920 11 + 60538159 - 60538242 1 84

ATG ...

MRR ...

21922 11 - 70978095 - 70978241 1 147

TTG ...

LYD ...

21924 11 + 106047658 - 106047834 1 177

CTG ...

LEC ...

21926 11 - 3648501 - 3648620 1 120

CTG ...

LEA ...

21928 11 - 121336956 - 121337057 1 102

CTG ...

LDS ...

21930 11 + 58954933 - 58955130 1 198

TTG ...

LAG ...

21932 11 - 4487225 - 4487368 1 144

CTG ...

LRQ ...

21935 11 - 69968434 - 69968472 1 39

TTG ...

LMM ...

21937 11 - 116852953 - 116853000 1 48

CTG ...

LTE ...

21939 11 - 55395783 - 55395842 1 60

TTG ...

LPW ...

21941 11 + 4167759 - 4167914 1 156

GTG ...

VAR ...

21943 11 - 3250266 - 3250349 1 84

CTG ...

LSV ...

Previous 190 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5