Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

21737 11 - 105180762 - 105180851 1 90

CTG ...

LGS ...

21739 11 + 53408078 - 53408197 1 120

GTG ...

VYY ...

21741 11 - 101098163 - 101098417 1 255

CTG ...

LLS ...

21743 11 + 58954912 - 58955130 1 219

CTG ...

LTA ...

21745 11 - 69658562 - 69658627 1 66

CTG ...

LEL ...

21747 11 - 86665813 - 86665842 1 30

ATG ...

MEK ...

21750 11 - 116082268 - 116082324 1 57

GTG ...

VFG ...

21752 11 - 76233187 - 76233297 1 111

TTG ...

LMK ...

21754 11 + 119272924 - 119273019 1 96

CTG ...

LSQ ...

21756 11 + 4212180 - 4212251 1 72

GTG ...

VIE ...

21758 11 + 5100409 - 5100519 1 111

TTG ...

LPM ...

21760 11 - 95310031 - 95310093 1 63

CTG ...

LPP ...

21762 1 - 181184247 - 181184378 1 132

CTG ...

LDS ...

21764 1 + 172318802 - 172318975 1 174

CTG ...

LVG ...

21766 11 + 78339367 - 78339492 1 126

CTG ...

LYS ...

21768 11 + 58918900 - 58918977 1 78

CTG ...

LPS ...

21770 11 + 62879543 - 62879599 1 57

GTG ...

VAL ...

21773 11 - 35833145 - 35833288 1 144

CTG ...

LTA ...

21776 11 + 78538896 - 78539018 1 123

GTG ...

VLD ...

21778 11 - 6274721 - 6274759 1 39

GTG ...

VCP ...

21780 11 + 112784933 - 112785136 1 204

CTG ...

LAV ...

21782 11 + 117813398 - 117813475 1 78

GTG ...

VEN ...

21784 11 + 109660138 - 109660173 1 36

CTG ...

LRR ...

21786 11 - 21559188 - 21559244 1 57

CTG ...

LRK ...

21788 11 + 78254977 - 78255138 1 162

CTG ...

LSV ...

21790 11 + 88049133 - 88049168 1 36

CTG ...

LVS ...

21792 11 + 72444913 - 72444981 1 69

CTG ...

LNS ...

21794 11 - 21558467 - 21558520 1 54

ATG ...

MAT ...

21796 11 + 5105894 - 5105977 1 84

GTG ...

VEG ...

21798 11 + 3333302 - 3333352 1 51

CTG ...

LLT ...

21800 11 + 121503763 - 121503795 1 33

TTG ...

LLP ...

21802 11 - 120382469 - 120382615 1 147

GTG ...

VQL ...

21805 11 + 69989999 - 69990037 1 39

GTG ...

VLS ...

21807 11 + 9048771 - 9048818 1 48

CTG ...

LLS ...

21809 11 + 98690584 - 98690667 1 84

CTG ...

LVS ...

21811 11 - 101092661 - 101092777 1 117

GTG ...

VYR ...

21813 11 - 96055872 - 96055919 1 48

ATG ...

MNV ...

21815 11 - 58322560 - 58322628 1 69

ATG ...

MLA ...

21818 11 - 115608386 - 115608592 1 207

CTG ...

LHR ...

21820 11 + 78540014 - 78540043 1 30

TTG ...

LPK ...

21822 11 + 31101129 - 31101242 1 114

TTG ...

LPL ...

21824 11 - 45955359 - 45955400 1 42

GTG ...

VPE ...

21827 11 + 72448271 - 72448381 1 111

CTG ...

LEL ...

21829 11 - 48817152 - 48817328 1 177

CTG ...

LVG ...

21831 11 + 58922309 - 58922551 1 243

CTG ...

LPL ...

21833 11 - 50311651 - 50311686 1 36

TTG ...

LKM ...

21835 11 + 95386549 - 95386620 1 72

CTG ...

LSP ...

21837 11 + 54438200 - 54438238 1 39

ATG ...

MTE ...

21839 11 + 119272981 - 119273019 1 39

GTG ...

VIV ...

21841 11 - 86785753 - 86785800 1 48

TTG ...

LEA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5