Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

21630 1 + 87264398 - 87264499 1 102

CTG ...

LSP ...

21632 11 + 102434802 - 102434843 1 42

CTG ...

LTK ...

21634 11 - 60801368 - 60801556 1 189

CTG ...

LVE ...

21637 11 + 50379893 - 50379988 1 96

ATG ...

MMA ...

21639 1 - 178331189 - 178331218 1 30

TTG ...

LQA ...

21641 11 - 96911534 - 96911680 1 147

CTG ...

LPM ...

21643 1 + 87443674 - 87443832 1 159

GTG ...

VES ...

21645 11 - 60804259 - 60804312 1 54

CTG ...

LGS ...

21647 11 + 119268106 - 119268222 1 117

CTG ...

LVK ...

21649 11 + 29733698 - 29733844 1 147

CTG ...

LLL ...

21651 11 + 58918930 - 58918977 1 48

CTG ...

LQL ...

21653 11 + 80383400 - 80383546 1 147

TTG ...

LFF ...

21656 11 - 115490599 - 115490712 1 114

TTG ...

LFT ...

21658 11 + 78304988 - 78305044 1 57

CTG ...

LEV ...

21660 11 - 106783954 - 106783992 1 39

CTG ...

LIA ...

21662 11 - 80057745 - 80057912 1 168

GTG ...

VLH ...

21664 11 - 96911869 - 96911979 1 111

CTG ...

LVK ...

21666 11 + 101279268 - 101279309 1 42

ATG ...

MDP ...

21668 11 - 84509612 - 84509794 1 183

TTG ...

LWD ...

21671 11 + 119268052 - 119268222 1 171

CTG ...

LSL ...

21673 11 + 119274257 - 119274355 1 99

CTG ...

LED ...

21675 11 - 3648501 - 3648695 1 195

GTG ...

VVG ...

21677 11 - 50298099 - 50298182 1 84

GTG ...

VVY ...

21679 11 - 88348831 - 88348866 1 36

CTG ...

LPA ...

21681 11 + 117813293 - 117813475 1 183

CTG ...

LAY ...

21683 11 + 88048501 - 88048554 1 54

ATG ...

MRC ...

21686 11 + 58920501 - 58920629 1 129

GTG ...

VGG ...

21688 11 + 52243667 - 52243723 1 57

ATG ...

MKT ...

21690 11 + 52118070 - 52118126 1 57

GTG ...

VFK ...

21692 11 + 72445913 - 72446065 1 153

GTG ...

VKF ...

21694 11 - 84911467 - 84911598 1 132

TTG ...

LMI ...

21696 11 - 106213251 - 106213304 1 54

TTG ...

LGV ...

21698 11 + 4213863 - 4214045 1 183

CTG ...

LVL ...

21700 11 + 72445690 - 72445737 1 48

TTG ...

LDD ...

21702 11 + 98795557 - 98795697 1 141

CTG ...

LPL ...

21705 11 + 78304835 - 78305044 1 210

TTG ...

LAW ...

21707 11 + 95386540 - 95386620 1 81

CTG ...

LPV ...

21709 11 + 119264365 - 119264514 1 150

CTG ...

LME ...

21711 11 + 78305195 - 78305380 1 186

CTG ...

LLN ...

21713 11 + 20224760 - 20224900 1 141

CTG ...

LEL ...

21715 11 - 21558467 - 21558508 1 42

ATG ...

MVS ...

21717 11 - 78207583 - 78207678 1 96

CTG ...

LTP ...

21719 11 - 101098163 - 101098342 1 180

CTG ...

LAL ...

21721 11 + 45907930 - 45908094 1 165

CTG ...

LPS ...

21723 11 - 69920356 - 69920418 1 63

ATG ...

MLV ...

21727 11 + 115566738 - 115566767 1 30

CTG ...

LSG ...

21729 11 + 48800420 - 48800467 1 48

GTG ...

VPS ...

21731 11 - 96911869 - 96911967 1 99

CTG ...

LPS ...

21733 11 - 97163349 - 97163510 1 162

TTG ...

LCT ...

21735 11 - 100958788 - 100958856 1 69

CTG ...

LST ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5