Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

22979 11 - 120562513 - 120562687 2 66

TTG ...

LMR ...

22981 1 - 54987930 - 54988121 1 192

GTG ...

VQH ...

22983 11 - 21558467 - 21559283 2 177

CTG ...

LSS ...

22985 11 - 50296320 - 50297107 2 66

ATG ...

MVL ...

22987 11 - 59785196 - 59787317 2 126

GTG ...

VQL ...

22989 11 - 120108909 - 120110153 3 228

CTG ...

LAA ...

22991 1 - 93725153 - 93725296 1 144

GTG ...

VVE ...

22993 11 - 84422956 - 84449151 4 249

TTG ...

LDP ...

22995 11 - 95303241 - 95310169 2 204

TTG ...

LGS ...

22998 11 + 106046824 - 106047673 2 63

GTG ...

VVT ...

23000 11 - 101092591 - 101092888 3 81

ATG ...

MSL ...

23002 11 - 75312139 - 75312707 3 180

CTG ...

LWG ...

23004 11 + 114686561 - 114690346 2 114

CTG ...

LLC ...

23007 11 - 116471397 - 116472224 2 207

CTG ...

LSA ...

23010 11 - 120594853 - 120595334 4 270

GTG ...

VFF ...

23012 11 + 69939278 - 69939919 2 96

GTG ...

VLE ...

23014 11 - 21559684 - 21562891 2 219

TTG ...

LDH ...

23016 11 - 55395590 - 55395815 2 39

TTG ...

LAS ...

23018 11 + 101285679 - 101286367 2 138

TTG ...

LVP ...

23020 11 - 84914304 - 84916332 3 189

CTG ...

LNC ...

23022 1 - 75501951 - 75502178 1 228

CTG ...

LSA ...

23025 11 + 52396494 - 52403046 2 111

GTG ...

VRG ...

23027 11 - 6274169 - 6274515 3 183

GTG ...

VCL ...

23029 11 + 86484700 - 86486128 3 168

GTG ...

VAS ...

23032 11 - 60793054 - 60794943 2 126

GTG ...

VWI ...

23034 11 + 86484694 - 86486128 3 174

CTG ...

LLV ...

23036 11 - 3438308 - 3452279 2 87

CTG ...

LAR ...

23041 11 - 58934198 - 58937189 2 84

ATG ...

MPG ...

23043 11 + 69324183 - 69324407 2 87

TTG ...

LTG ...

23045 11 - 97175757 - 97177283 2 132

GTG ...

VMR ...

23047 1 - 151473124 - 151473312 1 189

ATG ...

MVV ...

23050 1 - 93310092 - 93310223 1 132

CTG ...

LEI ...

23052 1 + 191596205 - 191596408 1 204

CTG ...

LIP ...

23054 11 - 21558467 - 21559292 2 186

GTG ...

VVL ...

23056 11 - 116080321 - 116080620 2 99

ATG ...

MSF ...

23058 11 - 6429213 - 6439452 2 90

CTG ...

LEA ...

23060 11 - 53264971 - 53265992 2 240

GTG ...

VEE ...

23062 1 + 172089102 - 172089200 1 99

GTG ...

VRG ...

23064 11 + 86484745 - 86486128 3 123

GTG ...

VSG ...

23066 11 + 5099875 - 5100519 2 147

CTG ...

LSS ...

23068 11 - 115268324 - 115268662 2 216

CTG ...

LLE ...

23070 1 + 179678111 - 179678140 1 30

GTG ...

VAL ...

23072 11 - 100583553 - 100584567 3 273

TTG ...

LMH ...

23074 11 - 100422928 - 100431286 3 228

ATG ...

MVQ ...

23078 11 - 115609075 - 115609637 3 186

GTG ...

VDL ...

23080 11 + 61512412 - 61512794 2 171

GTG ...

VVA ...

23083 11 - 85198069 - 85200357 2 147

ATG ...

MKT ...

23085 11 - 120563866 - 120568003 2 141

ATG ...

MTY ...

23087 11 - 120964978 - 120969080 3 231

CTG ...

LRG ...

23090 11 - 100718553 - 100720037 2 153

CTG ...

LAT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5